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base: millironx:2920d35b279f8f7a4e258ce6aeb767e9f357f85a
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millironx:master
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compare: millironx:95fbb483285576f8555516d2612d8f6db503b7d3
Branches Tags
millironx:master

2 commits
2920d35b27 ... 95fbb48328

Author SHA1 Message Date
Thomas A. Christensen II
95fbb48328
wip: more work 2023-10-25 22:23:47 -05:00
Thomas A. Christensen II
5d5c2bcdc0
wip: Closer to MVC model 2023-09-26 17:25:10 -05:00
10 changed files with 571 additions and 151 deletions
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1
.envrc Normal file
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@ -0,0 +1 @@
use nix

8
default.nix Normal file
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@ -0,0 +1,8 @@
{ pkgs ? import (fetchTarball "channel:nixos-23.05") {} }:
pkgs.mkShell {
buildInputs = [
pkgs.nodejs
];
}

318
package-lock.json generated
View file

@ -6,7 +6,7 @@
"packages": { "packages": {
"": { "": {
"name": "install-nextflow-action", "name": "install-nextflow-action",
"version": "1.2.0", "version": "1.3.0",
"license": "MIT", "license": "MIT",
"dependencies": { "dependencies": {
"@actions/core": "^1.8.2", "@actions/core": "^1.8.2",
@ -26,6 +26,7 @@
"@typescript-eslint/parser": "^5.42.1", "@typescript-eslint/parser": "^5.42.1",
"@vercel/ncc": "^0.34.0", "@vercel/ncc": "^0.34.0",
"ava": "^5.0.1", "ava": "^5.0.1",
"c8": "^8.0.1",
"eslint": "^8.27.0", "eslint": "^8.27.0",
"eslint-config-prettier": "^8.5.0", "eslint-config-prettier": "^8.5.0",
"eslint-plugin-ava": "^13.2.0", "eslint-plugin-ava": "^13.2.0",
@ -148,6 +149,12 @@
"node": ">=6.9.0" "node": ">=6.9.0"
} }
}, },
"node_modules/@bcoe/v8-coverage": {
"version": "0.2.3",
"resolved": "https://registry.npmjs.org/@bcoe/v8-coverage/-/v8-coverage-0.2.3.tgz",
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"dev": true
},
"node_modules/@cspotcode/source-map-support": { "node_modules/@cspotcode/source-map-support": {
"version": "0.8.1", "version": "0.8.1",
"resolved": "https://registry.npmjs.org/@cspotcode/source-map-support/-/source-map-support-0.8.1.tgz", "resolved": "https://registry.npmjs.org/@cspotcode/source-map-support/-/source-map-support-0.8.1.tgz",
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"dev": true "dev": true
}, },
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"resolved": "https://registry.npmjs.org/@istanbuljs/schema/-/schema-0.1.3.tgz",
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"dev": true,
"engines": {
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}
},
"node_modules/@jridgewell/resolve-uri": { "node_modules/@jridgewell/resolve-uri": {
"version": "3.1.0", "version": "3.1.0",
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@ -416,6 +432,12 @@
"@types/retry": "*" "@types/retry": "*"
} }
}, },
"node_modules/@types/istanbul-lib-coverage": {
"version": "2.0.4",
"resolved": "https://registry.npmjs.org/@types/istanbul-lib-coverage/-/istanbul-lib-coverage-2.0.4.tgz",
"integrity": "sha512-z/QT1XN4K4KYuslS23k62yDIDLwLFkzxOuMplDtObz0+y7VqJCaO2o+SPwHCvLFZh7xazvvoor2tA/hPz9ee7g==",
"dev": true
},
"node_modules/@types/json-schema": { "node_modules/@types/json-schema": {
"version": "7.0.11", "version": "7.0.11",
"resolved": "https://registry.npmjs.org/@types/json-schema/-/json-schema-7.0.11.tgz", "resolved": "https://registry.npmjs.org/@types/json-schema/-/json-schema-7.0.11.tgz",
@ -1136,6 +1158,32 @@
"node": "^6 || ^7 || ^8 || ^9 || ^10 || ^11 || ^12 || >=13.7" "node": "^6 || ^7 || ^8 || ^9 || ^10 || ^11 || ^12 || >=13.7"
} }
}, },
"node_modules/c8": {
"version": "8.0.1",
"resolved": "https://registry.npmjs.org/c8/-/c8-8.0.1.tgz",
"integrity": "sha512-EINpopxZNH1mETuI0DzRA4MZpAUH+IFiRhnmFD3vFr3vdrgxqi3VfE3KL0AIL+zDq8rC9bZqwM/VDmmoe04y7w==",
"dev": true,
"dependencies": {
"@bcoe/v8-coverage": "^0.2.3",
"@istanbuljs/schema": "^0.1.3",
"find-up": "^5.0.0",
"foreground-child": "^2.0.0",
"istanbul-lib-coverage": "^3.2.0",
"istanbul-lib-report": "^3.0.1",
"istanbul-reports": "^3.1.6",
"rimraf": "^3.0.2",
"test-exclude": "^6.0.0",
"v8-to-istanbul": "^9.0.0",
"yargs": "^17.7.2",
"yargs-parser": "^21.1.1"
},
"bin": {
"c8": "bin/c8.js"
},
"engines": {
"node": ">=12"
}
},
"node_modules/call-bind": { "node_modules/call-bind": {
"version": "1.0.2", "version": "1.0.2",
"resolved": "https://registry.npmjs.org/call-bind/-/call-bind-1.0.2.tgz", "resolved": "https://registry.npmjs.org/call-bind/-/call-bind-1.0.2.tgz",
@ -1415,6 +1463,12 @@
"node": ">=10.18.0 <11 || >=12.14.0 <13 || >=14" "node": ">=10.18.0 <11 || >=12.14.0 <13 || >=14"
} }
}, },
"node_modules/convert-source-map": {
"version": "2.0.0",
"resolved": "https://registry.npmjs.org/convert-source-map/-/convert-source-map-2.0.0.tgz",
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"dev": true
},
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@ -2452,6 +2506,19 @@
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"dev": true "dev": true
}, },
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"resolved": "https://registry.npmjs.org/foreground-child/-/foreground-child-2.0.0.tgz",
"integrity": "sha512-dCIq9FpEcyQyXKCkyzmlPTFNgrCzPudOe+mhvJU5zAtlBnGVy2yKxtfsxK2tQBThwq225jcvBjpw1Gr40uzZCA==",
"dev": true,
"dependencies": {
"cross-spawn": "^7.0.0",
"signal-exit": "^3.0.2"
},
"engines": {
"node": ">=8.0.0"
}
},
"node_modules/fs.realpath": { "node_modules/fs.realpath": {
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"resolved": "https://registry.npmjs.org/fs.realpath/-/fs.realpath-1.0.0.tgz", "resolved": "https://registry.npmjs.org/fs.realpath/-/fs.realpath-1.0.0.tgz",
@ -2704,6 +2771,12 @@
"url": "https://github.com/sponsors/ljharb" "url": "https://github.com/sponsors/ljharb"
} }
}, },
"node_modules/html-escaper": {
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"resolved": "https://registry.npmjs.org/html-escaper/-/html-escaper-2.0.2.tgz",
"integrity": "sha512-H2iMtd0I4Mt5eYiapRdIDjp+XzelXQ0tFE4JS7YFwFevXXMmOp9myNrUvCg0D6ws8iqkRPBfKHgbwig1SmlLfg==",
"dev": true
},
"node_modules/human-signals": { "node_modules/human-signals": {
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@ -3108,6 +3181,42 @@
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}, },
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}
},
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"dev": true,
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},
"node_modules/istanbul-reports": {
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},
"engines": {
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}
},
"node_modules/js-sdsl": { "node_modules/js-sdsl": {
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"resolved": "https://registry.npmjs.org/js-sdsl/-/js-sdsl-4.1.5.tgz", "resolved": "https://registry.npmjs.org/js-sdsl/-/js-sdsl-4.1.5.tgz",
@ -3274,6 +3383,21 @@
"node": ">=10" "node": ">=10"
} }
}, },
"node_modules/make-dir": {
"version": "4.0.0",
"resolved": "https://registry.npmjs.org/make-dir/-/make-dir-4.0.0.tgz",
"integrity": "sha512-hXdUTZYIVOt1Ex//jAQi+wTZZpUpwBj/0QsOzqegb3rGMMeJiSEu5xLHnYfBrRV4RH2+OCSOO95Is/7x1WJ4bw==",
"dev": true,
"dependencies": {
"semver": "^7.5.3"
},
"engines": {
"node": ">=10"
},
"funding": {
"url": "https://github.com/sponsors/sindresorhus"
}
},
"node_modules/make-error": { "node_modules/make-error": {
"version": "1.3.6", "version": "1.3.6",
"resolved": "https://registry.npmjs.org/make-error/-/make-error-1.3.6.tgz", "resolved": "https://registry.npmjs.org/make-error/-/make-error-1.3.6.tgz",
@ -4133,9 +4257,9 @@
} }
}, },
"node_modules/semver": { "node_modules/semver": {
"version": "7.3.7", "version": "7.5.4",
"resolved": "https://registry.npmjs.org/semver/-/semver-7.3.7.tgz", "resolved": "https://registry.npmjs.org/semver/-/semver-7.5.4.tgz",
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}, },
@ -4499,6 +4623,20 @@
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} }
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@ -5039,6 +5201,12 @@
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@ -5270,6 +5444,12 @@
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"version": "1.0.2", "version": "1.0.2",
"resolved": "https://registry.npmjs.org/call-bind/-/call-bind-1.0.2.tgz", "resolved": "https://registry.npmjs.org/call-bind/-/call-bind-1.0.2.tgz",
@ -5961,6 +6161,12 @@
"well-known-symbols": "^2.0.0" "well-known-symbols": "^2.0.0"
} }
}, },
"convert-source-map": {
"version": "2.0.0",
"resolved": "https://registry.npmjs.org/convert-source-map/-/convert-source-map-2.0.0.tgz",
"integrity": "sha512-Kvp459HrV2FEJ1CAsi1Ku+MY3kasH19TFykTz2xWmMeq6bk2NU3XXvfJ+Q61m0xktWwt+1HSYf3JZsTms3aRJg==",
"dev": true
},
"convert-to-spaces": { "convert-to-spaces": {
"version": "2.0.1", "version": "2.0.1",
"resolved": "https://registry.npmjs.org/convert-to-spaces/-/convert-to-spaces-2.0.1.tgz", "resolved": "https://registry.npmjs.org/convert-to-spaces/-/convert-to-spaces-2.0.1.tgz",
@ -6732,6 +6938,16 @@
"integrity": "sha512-5nqDSxl8nn5BSNxyR3n4I6eDmbolI6WT+QqR547RwxQapgjQBmtktdP+HTBb/a/zLsbzERTONyUB5pefh5TtjQ==", "integrity": "sha512-5nqDSxl8nn5BSNxyR3n4I6eDmbolI6WT+QqR547RwxQapgjQBmtktdP+HTBb/a/zLsbzERTONyUB5pefh5TtjQ==",
"dev": true "dev": true
}, },
"foreground-child": {
"version": "2.0.0",
"resolved": "https://registry.npmjs.org/foreground-child/-/foreground-child-2.0.0.tgz",
"integrity": "sha512-dCIq9FpEcyQyXKCkyzmlPTFNgrCzPudOe+mhvJU5zAtlBnGVy2yKxtfsxK2tQBThwq225jcvBjpw1Gr40uzZCA==",
"dev": true,
"requires": {
"cross-spawn": "^7.0.0",
"signal-exit": "^3.0.2"
}
},
"fs.realpath": { "fs.realpath": {
"version": "1.0.0", "version": "1.0.0",
"resolved": "https://registry.npmjs.org/fs.realpath/-/fs.realpath-1.0.0.tgz", "resolved": "https://registry.npmjs.org/fs.realpath/-/fs.realpath-1.0.0.tgz",
@ -6905,6 +7121,12 @@
"has-symbols": "^1.0.2" "has-symbols": "^1.0.2"
} }
}, },
"html-escaper": {
"version": "2.0.2",
"resolved": "https://registry.npmjs.org/html-escaper/-/html-escaper-2.0.2.tgz",
"integrity": "sha512-H2iMtd0I4Mt5eYiapRdIDjp+XzelXQ0tFE4JS7YFwFevXXMmOp9myNrUvCg0D6ws8iqkRPBfKHgbwig1SmlLfg==",
"dev": true
},
"human-signals": { "human-signals": {
"version": "2.1.0", "version": "2.1.0",
"resolved": "https://registry.npmjs.org/human-signals/-/human-signals-2.1.0.tgz", "resolved": "https://registry.npmjs.org/human-signals/-/human-signals-2.1.0.tgz",
@ -7171,6 +7393,33 @@
"integrity": "sha512-RHxMLp9lnKHGHRng9QFhRCMbYAcVpn69smSGcq3f36xjgVVWThj4qqLbTLlq7Ssj8B+fIQ1EuCEGI2lKsyQeIw==", "integrity": "sha512-RHxMLp9lnKHGHRng9QFhRCMbYAcVpn69smSGcq3f36xjgVVWThj4qqLbTLlq7Ssj8B+fIQ1EuCEGI2lKsyQeIw==",
"dev": true "dev": true
}, },
"istanbul-lib-coverage": {
"version": "3.2.0",
"resolved": "https://registry.npmjs.org/istanbul-lib-coverage/-/istanbul-lib-coverage-3.2.0.tgz",
"integrity": "sha512-eOeJ5BHCmHYvQK7xt9GkdHuzuCGS1Y6g9Gvnx3Ym33fz/HpLRYxiS0wHNr+m/MBC8B647Xt608vCDEvhl9c6Mw==",
"dev": true
},
"istanbul-lib-report": {
"version": "3.0.1",
"resolved": "https://registry.npmjs.org/istanbul-lib-report/-/istanbul-lib-report-3.0.1.tgz",
"integrity": "sha512-GCfE1mtsHGOELCU8e/Z7YWzpmybrx/+dSTfLrvY8qRmaY6zXTKWn6WQIjaAFw069icm6GVMNkgu0NzI4iPZUNw==",
"dev": true,
"requires": {
"istanbul-lib-coverage": "^3.0.0",
"make-dir": "^4.0.0",
"supports-color": "^7.1.0"
}
},
"istanbul-reports": {
"version": "3.1.6",
"resolved": "https://registry.npmjs.org/istanbul-reports/-/istanbul-reports-3.1.6.tgz",
"integrity": "sha512-TLgnMkKg3iTDsQ9PbPTdpfAK2DzjF9mqUG7RMgcQl8oFjad8ob4laGxv5XV5U9MAfx8D6tSJiUyuAwzLicaxlg==",
"dev": true,
"requires": {
"html-escaper": "^2.0.0",
"istanbul-lib-report": "^3.0.0"
}
},
"js-sdsl": { "js-sdsl": {
"version": "4.1.5", "version": "4.1.5",
"resolved": "https://registry.npmjs.org/js-sdsl/-/js-sdsl-4.1.5.tgz", "resolved": "https://registry.npmjs.org/js-sdsl/-/js-sdsl-4.1.5.tgz",
@ -7307,6 +7556,15 @@
"yallist": "^4.0.0" "yallist": "^4.0.0"
} }
}, },
"make-dir": {
"version": "4.0.0",
"resolved": "https://registry.npmjs.org/make-dir/-/make-dir-4.0.0.tgz",
"integrity": "sha512-hXdUTZYIVOt1Ex//jAQi+wTZZpUpwBj/0QsOzqegb3rGMMeJiSEu5xLHnYfBrRV4RH2+OCSOO95Is/7x1WJ4bw==",
"dev": true,
"requires": {
"semver": "^7.5.3"
}
},
"make-error": { "make-error": {
"version": "1.3.6", "version": "1.3.6",
"resolved": "https://registry.npmjs.org/make-error/-/make-error-1.3.6.tgz", "resolved": "https://registry.npmjs.org/make-error/-/make-error-1.3.6.tgz",
@ -7873,9 +8131,9 @@
} }
}, },
"semver": { "semver": {
"version": "7.3.7", "version": "7.5.4",
"resolved": "https://registry.npmjs.org/semver/-/semver-7.3.7.tgz", "resolved": "https://registry.npmjs.org/semver/-/semver-7.5.4.tgz",
"integrity": "sha512-QlYTucUYOews+WeEujDoEGziz4K6c47V/Bd+LjSSYcA94p+DmINdf7ncaUinThfvZyu13lN9OY1XDxt8C0Tw0g==", "integrity": "sha512-1bCSESV6Pv+i21Hvpxp3Dx+pSD8lIPt8uVjRrxAUt/nbswYc+tK6Y2btiULjd4+fnq15PX+nqQDC7Oft7WkwcA==",
"requires": { "requires": {
"lru-cache": "^6.0.0" "lru-cache": "^6.0.0"
} }
@ -8128,6 +8386,17 @@
"integrity": "sha512-aoBAniQmmwtcKp/7BzsH8Cxzv8OL736p7v1ihGb5e9DJ9kTwGWHrQrVB5+lfVDzfGrdRzXch+ig7LHaY1JTOrg==", "integrity": "sha512-aoBAniQmmwtcKp/7BzsH8Cxzv8OL736p7v1ihGb5e9DJ9kTwGWHrQrVB5+lfVDzfGrdRzXch+ig7LHaY1JTOrg==",
"dev": true "dev": true
}, },
"test-exclude": {
"version": "6.0.0",
"resolved": "https://registry.npmjs.org/test-exclude/-/test-exclude-6.0.0.tgz",
"integrity": "sha512-cAGWPIyOHU6zlmg88jwm7VRyXnMN7iV68OGAbYDk/Mh/xC/pzVPlQtY6ngoIH/5/tciuhGfvESU8GrHrcxD56w==",
"dev": true,
"requires": {
"@istanbuljs/schema": "^0.1.2",
"glob": "^7.1.4",
"minimatch": "^3.0.4"
}
},
"text-table": { "text-table": {
"version": "0.2.0", "version": "0.2.0",
"resolved": "https://registry.npmjs.org/text-table/-/text-table-0.2.0.tgz", "resolved": "https://registry.npmjs.org/text-table/-/text-table-0.2.0.tgz",
@ -8275,6 +8544,29 @@
"integrity": "sha512-wa7YjyUGfNZngI/vtK0UHAN+lgDCxBPCylVXGp0zu59Fz5aiGtNXaq3DhIov063MorB+VfufLh3JlF2KdTK3xg==", "integrity": "sha512-wa7YjyUGfNZngI/vtK0UHAN+lgDCxBPCylVXGp0zu59Fz5aiGtNXaq3DhIov063MorB+VfufLh3JlF2KdTK3xg==",
"dev": true "dev": true
}, },
"v8-to-istanbul": {
"version": "9.1.3",
"resolved": "https://registry.npmjs.org/v8-to-istanbul/-/v8-to-istanbul-9.1.3.tgz",
"integrity": "sha512-9lDD+EVI2fjFsMWXc6dy5JJzBsVTcQ2fVkfBvncZ6xJWG9wtBhOldG+mHkSL0+V1K/xgZz0JDO5UT5hFwHUghg==",
"dev": true,
"requires": {
"@jridgewell/trace-mapping": "^0.3.12",
"@types/istanbul-lib-coverage": "^2.0.1",
"convert-source-map": "^2.0.0"
},
"dependencies": {
"@jridgewell/trace-mapping": {
"version": "0.3.19",
"resolved": "https://registry.npmjs.org/@jridgewell/trace-mapping/-/trace-mapping-0.3.19.tgz",
"integrity": "sha512-kf37QtfW+Hwx/buWGMPcR60iF9ziHa6r/CZJIHbmcm4+0qrXiVdxegAH0F6yddEVQ7zdkjcGCgCzUu+BcbhQxw==",
"dev": true,
"requires": {
"@jridgewell/resolve-uri": "^3.1.0",
"@jridgewell/sourcemap-codec": "^1.4.14"
}
}
}
},
"webidl-conversions": { "webidl-conversions": {
"version": "3.0.1", "version": "3.0.1",
"resolved": "https://registry.npmjs.org/webidl-conversions/-/webidl-conversions-3.0.1.tgz", "resolved": "https://registry.npmjs.org/webidl-conversions/-/webidl-conversions-3.0.1.tgz",
@ -8386,9 +8678,9 @@
"integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A==" "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A=="
}, },
"yargs": { "yargs": {
"version": "17.6.2", "version": "17.7.2",
"resolved": "https://registry.npmjs.org/yargs/-/yargs-17.6.2.tgz", "resolved": "https://registry.npmjs.org/yargs/-/yargs-17.7.2.tgz",
"integrity": "sha512-1/9UrdHjDZc0eOU0HxOHoS78C69UD3JRMvzlJ7S79S2nTaWRA/whGCTV8o9e/N/1Va9YIV7Q4sOxD8VV4pCWOw==", "integrity": "sha512-7dSzzRQ++CKnNI/krKnYRV7JKKPUXMEh61soaHKg9mrWEhzFWhFnxPxGl+69cD1Ou63C13NUPCnmIcrvqCuM6w==",
"dev": true, "dev": true,
"requires": { "requires": {
"cliui": "^8.0.1", "cliui": "^8.0.1",

3
package.json
View file

@ -10,7 +10,7 @@
"lint": "eslint {src,test}/**/*.ts", "lint": "eslint {src,test}/**/*.ts",
"lint:fix": "eslint --fix {src,test}/**/*.ts", "lint:fix": "eslint --fix {src,test}/**/*.ts",
"package": "ncc build --source-map --license LICENSE", "package": "ncc build --source-map --license LICENSE",
"test": "ava", "test": "c8 --reporter=lcov ava",
"all": "npm run build && npm run format && npm run lint && npm run package && npm test" "all": "npm run build && npm run format && npm run lint && npm run package && npm test"
}, },
"repository": { "repository": {
@ -63,6 +63,7 @@
"@typescript-eslint/parser": "^5.42.1", "@typescript-eslint/parser": "^5.42.1",
"@vercel/ncc": "^0.34.0", "@vercel/ncc": "^0.34.0",
"ava": "^5.0.1", "ava": "^5.0.1",
"c8": "^8.0.1",
"eslint": "^8.27.0", "eslint": "^8.27.0",
"eslint-config-prettier": "^8.5.0", "eslint-config-prettier": "^8.5.0",
"eslint-plugin-ava": "^13.2.0", "eslint-plugin-ava": "^13.2.0",

44
src/NextflowRelease.ts Normal file
View file

@ -0,0 +1,44 @@
/**
* Houses the pertinent data that GitHub exposes for each Nextflow release
*/
export type NextflowRelease = {
versionNumber: string;
isEdge: boolean;
binaryURL: string;
allBinaryURL: string;
}
/**
* Converts the raw OctoKit data into a structured NextflowRelease
* @param data A "release" data struct from OctoKit
* @returns `data` converted into a `NextflowRelease`
*/
export function nextflow_release(data: object) {
const nf_release: NextflowRelease = {
versionNumber: data["tag_name"],
isEdge: data["prerelease"],
binaryURL: nextflow_bin_url(data, false),
allBinaryURL: nextflow_bin_url(data, true)
}
return nf_release
}
/**
* Gets the download URL of a Nextflow binary
* @param release A "release" data struct from OctoKit
* @param get_all Whether to return the url for the "all" variant of Nextflow
* @returns The URL of the Nextflow binary
*/
export function nextflow_bin_url(release: object, get_all: boolean): string {
const release_assets = release["assets"]
const all_asset = release_assets.filter((a: object) => {
return a["browser_download_url"].endsWith("-all")
})[0]
const regular_asset = release_assets.filter((a: object) => {
return a["name"] === "nextflow"
})[0]
const dl_asset = get_all ? all_asset : regular_asset
return dl_asset.browser_download_url
}

45
src/OctokitWrapper.ts Normal file
View file

@ -0,0 +1,45 @@
import { GitHub } from "@actions/github/lib/utils"
import * as github from "@actions/github"
import * as core from "@actions/core"
import { NextflowRelease, nextflow_release } from "./NextflowRelease"
const NEXTFLOW_REPO = { owner: "nextflow-io", repo: "nextflow" }
export async function setup_octokit(
github_token: string
): Promise<InstanceType<typeof GitHub>> {
let octokit = {} as InstanceType<typeof GitHub>
try {
octokit = github.getOctokit(github_token)
} catch (e: unknown) {
if (e instanceof Error) {
core.setFailed(
`Could not authenticate to GitHub Releases API with provided token\n${e.message}`
)
}
}
return octokit
}
export async function pull_releases(
octokit: InstanceType<typeof GitHub>
): Promise<Array<NextflowRelease>> {
const all_release_data: object[] = await all_nf_release_data(octokit)
var all_releases: NextflowRelease[] = []
all_release_data.forEach(data => {
all_releases.push(nextflow_release(data))
})
return all_releases
}
export async function all_nf_release_data(
ok: InstanceType<typeof GitHub>
): Promise<object[]> {
return await ok.paginate(
ok.rest.repos.listReleases,
NEXTFLOW_REPO,
response => response.data
)
}

85
src/functions.ts
View file

@ -1,41 +1,15 @@
import * as core from "@actions/core" import * as core from "@actions/core"
import { GitHub } from "@actions/github/lib/utils"
import * as tc from "@actions/tool-cache" import * as tc from "@actions/tool-cache"
import retry from "async-retry" import retry from "async-retry"
import * as fs from "fs" import * as fs from "fs"
import semver from "semver" import semver from "semver"
const NEXTFLOW_REPO = { owner: "nextflow-io", repo: "nextflow" } import { NextflowRelease } from "./NextflowRelease"
// HACK Private but I want to test this function tag_filter(version: string): (NextflowRelease) => Boolean {
export async function all_nf_releases(
ok: InstanceType<typeof GitHub>
): Promise<object[]> {
return await ok.paginate(
ok.rest.repos.listReleases,
NEXTFLOW_REPO,
response => response.data
)
}
// HACK Private but I want to test this
export async function latest_stable_release_data(
ok: InstanceType<typeof GitHub>
): Promise<object> {
const { data: stable_release } = await ok.rest.repos.getLatestRelease(
NEXTFLOW_REPO
)
return stable_release
}
export async function release_data(
version: string,
ok: InstanceType<typeof GitHub>
): Promise<object> {
// Setup tag-based filtering // Setup tag-based filtering
let filter = (r: object): boolean => { let filter = (r: NextflowRelease): boolean => {
return semver.satisfies(r["tag_name"], version, true) return semver.satisfies(r.versionNumber, version, true)
} }
// Check if the user passed a 'latest*' tag, and override filtering // Check if the user passed a 'latest*' tag, and override filtering
@ -44,52 +18,47 @@ export async function release_data(
if (version.includes("-everything")) { if (version.includes("-everything")) {
// No filtering // No filtering
// eslint-disable-next-line @typescript-eslint/no-unused-vars // eslint-disable-next-line @typescript-eslint/no-unused-vars
filter = (r: object) => { filter = (r: NextflowRelease) => {
return true return true
} }
} else if (version.includes("-edge")) { } else if (version.includes("-edge")) {
filter = r => { filter = (r: NextflowRelease) => {
return r["tag_name"].endsWith("-edge") return r.versionNumber.endsWith("-edge")
} }
} else { } else {
// This is special: passing 'latest' or 'latest-stable' allows us to use filter = (r: NextflowRelease) => {
// the latest stable GitHub release direct from the API return !r.isEdge
const stable_release = await latest_stable_release_data(ok) }
return stable_release
} }
} }
return filter
}
// Get all the releases export async function get_nextflow_release(
const all_releases: object[] = await all_nf_releases(ok) version: string,
releases: Array<NextflowRelease>
const matching_releases = all_releases.filter(filter) ): Promise<NextflowRelease> {
// Filter the releases
const filter = tag_filter(version);
const matching_releases = releases.filter(filter)
matching_releases.sort((x, y) => { matching_releases.sort((x, y) => {
// HACK IDK why the value flip is necessary with the return // HACK IDK why the value flip is necessary with the return
return semver.compare(x["tag_name"], y["tag_name"], true) * -1 return semver.compare(x.versionNumber, y.versionNumber, true) * -1
}) })
return matching_releases[0] return matching_releases[0]
} }
export function nextflow_bin_url(release: object, get_all: boolean): string {
const release_assets = release["assets"]
const all_asset = release_assets.filter((a: object) => {
return a["browser_download_url"].endsWith("-all")
})[0]
const regular_asset = release_assets.filter((a: object) => {
return a["name"] === "nextflow"
})[0]
const dl_asset = get_all ? all_asset : regular_asset
return dl_asset.browser_download_url
}
export async function install_nextflow( export async function install_nextflow(
url: string, release: NextflowRelease,
version: string get_all: boolean
): Promise<string> { ): Promise<string> {
const url = get_all ? release.allBinaryURL : release.binaryURL
const version = release.versionNumber
core.debug(`Downloading Nextflow from ${url}`) core.debug(`Downloading Nextflow from ${url}`)
const nf_dl_path = await retry( const nf_dl_path = await retry(
// eslint-disable-next-line @typescript-eslint/no-unused-vars // eslint-disable-next-line @typescript-eslint/no-unused-vars

45
src/main.ts
View file

@ -1,7 +1,5 @@
import * as core from "@actions/core" import * as core from "@actions/core"
import * as exec from "@actions/exec" import * as exec from "@actions/exec"
import * as github from "@actions/github"
import { GitHub } from "@actions/github/lib/utils"
import * as tc from "@actions/tool-cache" import * as tc from "@actions/tool-cache"
import * as fs from "fs" import * as fs from "fs"
import semver from "semver" import semver from "semver"
@ -9,12 +7,15 @@ import semver from "semver"
import { import {
check_cache, check_cache,
install_nextflow, install_nextflow,
nextflow_bin_url, get_nextflow_release
release_data
} from "./functions" } from "./functions"
import { NextflowRelease } from "./NextflowRelease"
import { pull_releases, setup_octokit } from "./OctokitWrapper"
async function run(): Promise<void> { async function run(): Promise<void> {
// Set environment variables // CAPSULE_LOG leads to a bunch of boilerplate being output to the logs: turn
// it off
core.exportVariable("CAPSULE_LOG", "none") core.exportVariable("CAPSULE_LOG", "none")
// Read in the arguments // Read in the arguments
@ -28,25 +29,16 @@ async function run(): Promise<void> {
} }
// Setup the API // Setup the API
let octokit: InstanceType<typeof GitHub> | undefined const octokit = await setup_octokit(token)
try {
octokit = github.getOctokit(token) const releases = await pull_releases(octokit)
} catch (e: unknown) {
if (e instanceof Error) {
core.setFailed(
`Could not authenticate to GitHub Releases API with provided token\n${e.message}`
)
}
}
// Get the release info for the desired release // Get the release info for the desired release
let release = {} let release = {} as NextflowRelease;
let resolved_version = "" let resolved_version = "";
try { try {
if (octokit !== undefined) { release = await get_nextflow_release(version, releases)
release = await release_data(version, octokit) resolved_version = release.versionNumber
}
resolved_version = release["tag_name"]
core.info( core.info(
`Input version '${version}' resolved to Nextflow ${release["name"]}` `Input version '${version}' resolved to Nextflow ${release["name"]}`
) )
@ -59,19 +51,10 @@ async function run(): Promise<void> {
} }
// Get the download url for the desired release // Get the download url for the desired release
let url = ""
try {
url = nextflow_bin_url(release, get_all)
core.info(`Preparing to download from ${url}`)
} catch (e: unknown) {
if (e instanceof Error) {
core.setFailed(`Could not parse the download URL\n${e.message}`)
}
}
try { try {
// Download Nextflow and add it to path // Download Nextflow and add it to path
if (!check_cache(resolved_version)) { if (!check_cache(resolved_version)) {
const nf_install_path = await install_nextflow(url, resolved_version) const nf_install_path = await install_nextflow(release, get_all)
const cleaned_version = String(semver.clean(resolved_version, true)) const cleaned_version = String(semver.clean(resolved_version, true))
const nf_path = await tc.cacheDir( const nf_path = await tc.cacheDir(
nf_install_path, nf_install_path,

134
test/functions.ts
View file

@ -1,37 +1,113 @@
import * as github from "@actions/github" import test from "ava" // eslint-disable-line import/no-unresolved
import { GitHub } from "@actions/github/lib/utils"
import anyTest, { TestFn } from "ava" // eslint-disable-line import/no-unresolved
import * as functions from "../src/functions" import * as functions from "../src/functions"
import { getReleaseTag, getToken } from "./utils" import { NextflowRelease } from "../src/NextflowRelease"
const test = anyTest as TestFn<{ // The Nextflow releases we are going to use for testing follow a regular
token: string // pattern: create a mock function to bootstrap some test data without repeating
octokit: InstanceType<typeof GitHub> // ourselves
}> function nf_release_gen(version_number: string): NextflowRelease {
const is_edge = version_number.endsWith("-edge")
test.before(t => { const release: NextflowRelease = {
const first = true versionNumber: version_number,
const current_token = getToken(first) isEdge: is_edge,
t.context = { binaryURL: `https://github.com/nextflow-io/nextflow/releases/download/${version_number}/nextflow`,
token: current_token, allBinaryURL: `https://github.com/nextflow-io/nextflow/releases/download/${version_number}/nextflow-${version_number.replace(
octokit: github.getOctokit(current_token) "v",
""
)}-all`
} }
}) return release
}
test("all_nf_releases", async t => { // A mock set of Nextflow releases
const result = await functions.all_nf_releases(t.context["octokit"]) const edge_is_newer = [
t.is(typeof result, "object") nf_release_gen("v23.09.1-edge"),
}) nf_release_gen("v23.04.3"),
nf_release_gen("v23.04.2")
]
const edge_is_older = [
nf_release_gen("v23.04.3"),
nf_release_gen("v23.04.2"),
nf_release_gen("v23.03.0-edge")
]
test("lastest_stable_release_data", async t => { /*
const result = await functions.latest_stable_release_data( The whole reason this action exists is to handle the cases where a final
t.context["octokit"] release is the "bleeding edge" release, rather than the "edge" release, even
) though that's what the name would imply. Therefore, we need to test that the
t.is(typeof result, "object") 'latest-everything' parameter can find the correct one regardless of whether
const expected = await getReleaseTag("nextflow-io/nextflow", false) an "edge" release or a stable release is the true latest
t.is(result["tag_name"], expected) */
}) const release_filter_macro = test.macro(
async (
t,
input_version: string,
expected_version: string,
releases: Array<NextflowRelease>
) => {
const matched_release = await functions.get_nextflow_release(
input_version,
releases
)
t.is(matched_release.versionNumber, expected_version)
}
)
test(
"Latest-everything install with newer edge release",
release_filter_macro,
"latest-everything",
"v23.09.1-edge",
edge_is_newer
)
test(
"Latest-everything install with older edge release",
release_filter_macro,
"latest-everything",
"v23.04.3",
edge_is_older
)
test(
"Latest-edge install with newer edge release",
release_filter_macro,
"latest-edge",
"v23.09.1-edge",
edge_is_newer
)
test(
"Latest-edge install with older edge release",
release_filter_macro,
"latest-edge",
"v23.03.0-edge",
edge_is_older
)
test(
"Latest-stable install with newer edge release",
release_filter_macro,
"latest",
"v23.04.3",
edge_is_newer
)
test(
"Latest-stable install with older edge release",
release_filter_macro,
"latest",
"v23.04.3",
edge_is_older
)
test(
"Fully versioned tag release",
release_filter_macro,
"v23.04.2",
"v23.04.2",
edge_is_newer
)
test(
"Partially versioned tag release",
release_filter_macro,
"v23.04",
"v23.04.3",
edge_is_newer
)
test.todo("nextflow_bin_url")
test.todo("install_nextflow") test.todo("install_nextflow")

39
test/releasedata.ts
View file

@ -2,8 +2,9 @@ import * as github from "@actions/github"
import { GitHub } from "@actions/github/lib/utils" import { GitHub } from "@actions/github/lib/utils"
import anyTest, { TestFn } from "ava" // eslint-disable-line import/no-unresolved import anyTest, { TestFn } from "ava" // eslint-disable-line import/no-unresolved
import { release_data } from "../src/functions" import { getToken } from "./utils"
import { getReleaseTag, getToken } from "./utils" import { all_nf_release_data } from "../src/OctokitWrapper"
import { nextflow_bin_url } from "../src/NextflowRelease"
const test = anyTest as TestFn<{ const test = anyTest as TestFn<{
token: string token: string
@ -19,22 +20,22 @@ test.before(t => {
} }
}) })
const macro = test.macro(async (t, version: string) => { const exists_macro = test.macro(async (t, object_name: string) => {
let expected const all_releases = await all_nf_release_data(t.context.octokit)
if (version === "latest-stable") { const first_release = all_releases[0]
expected = await getReleaseTag("nextflow-io/nextflow", false) t.assert(first_release.hasOwnProperty(object_name))
} else if (version === "latest-edge") {
expected = await getReleaseTag("nextflow-io/nextflow", true)
} else if (version === "latest-everything") {
expected = await getReleaseTag("nextflow-io/nextflow", undefined)
} else {
expected = version
}
const result = await release_data(version, t.context["octokit"])
t.is(result["tag_name"], expected)
}) })
test("hard version", macro, "v22.10.2") test("OctoKit returns tag", exists_macro, "tag_name")
test("latest-stable", macro, "latest-stable") test("Octokit returns prerelease", exists_macro, "prerelease")
test("latest-edge", macro, "latest-edge") test("Octokit returns assets", exists_macro, "assets")
test("latest-everything", macro, "latest-everything")
const binary_url_macro = test.macro(async (t, get_all: boolean) => {
const all_releases = await all_nf_release_data(t.context.octokit)
const first_release = all_releases[0]
const url = nextflow_bin_url(first_release, get_all)
t.notThrows(() => new URL(url))
})
test("Nextflow binary URL valid", binary_url_macro, false)
test("Nextflow 'all' binary URL valid", binary_url_macro, true)