test: Update version checking tests

Separation of concerns. We want to completely separate the internals of
Octokit from this application, so move any reference/call to Octokit into
its own file to symbolize that.

.github/workflows/test.yml

@@ -26,3 +26,6 @@ jobs:
       - run: npm run test
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      - uses: codecov/codecov-action@v3
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

CHANGELOG.md

@@ -7,9 +7,12 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [1.4.0] - 2023-08-12
+
 ## Changed
 
 - If `fs.renameSync` fails (e.g. because source and destination files are on different partitions), try `fs.copySync` and `fs.unlinkSync` instead (#14).
+- Fail instead of warn, when `nextflow help`` doesn't work (#23).
 
 ## Fixed
 
@@ -55,7 +58,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - GitHub Actions workflow to test Nextflow installation and downstream usage
 - Documentation and license files
 
-[unreleased]: https://github.com/nf-core/setup-nextflow/compare/v1.3.0...HEAD
+[unreleased]: https://github.com/nf-core/setup-nextflow/compare/v1.4.0...HEAD
+[1.4.0]: https://github.com/nf-core/setup-nextflow/compare/v1.3.0...v1.4.0
 [1.3.0]: https://github.com/nf-core/setup-nextflow/compare/v1.2.0...v1.3.0
 [1.2.0]: https://github.com/nf-core/setup-nextflow/compare/v1.1.1...v1.2.0
 [1.1.0]: https://github.com/nf-core/setup-nextflow/compare/v1.0.1...v1.1.0

README.md

@@ -1,6 +1,7 @@
 # ![nf-core/setup-nextflow](docs/images/nfcore-setupnextflow_logo.png#gh-light-mode-only) ![nf-core/setup-nextflow](docs/images/nfcore-setupnextflow_logo_dark.png#gh-dark-mode-only)
 
 [![Testing](https://github.com/nf-core/setup-nextflow/actions/workflows/example.yml/badge.svg)](https://github.com/nf-core/setup-nextflow/actions/workflows/example.yml)
+[![codecov](https://codecov.io/gh/nf-core/setup-nextflow/branch/master/graph/badge.svg)](https://codecov.io/gh/nf-core/setup-nextflow)
 [![MIT License](https://img.shields.io/github/license/nf-core/setup-nextflow?logo=opensourceinitiative)](https://github.com/nf-core/setup-nextflow/blob/master/LICENSE)
 [![GitHub tag (latest by date)](https://img.shields.io/github/v/tag/nf-core/setup-nextflow?logo=github)](https://github.com/nf-core/setup-nextflow/releases/latest)
 [![Get from GitHub Actions](https://img.shields.io/static/v1?label=actions&message=marketplace&color=green&logo=githubactions)](https://github.com/marketplace/actions/setup-nextflow)

package-lock.json

@@ -1,12 +1,12 @@
 {
   "name": "install-nextflow-action",
-  "version": "1.3.0",
+  "version": "1.4.0",
   "lockfileVersion": 2,
   "requires": true,
   "packages": {
     "": {
       "name": "install-nextflow-action",
-      "version": "1.2.0",
+      "version": "1.4.0",
       "license": "MIT",
       "dependencies": {
         "@actions/core": "^1.8.2",
@@ -26,6 +26,7 @@
         "@typescript-eslint/parser": "^5.42.1",
         "@vercel/ncc": "^0.34.0",
         "ava": "^5.0.1",
+        "c8": "^8.0.1",
         "eslint": "^8.27.0",
         "eslint-config-prettier": "^8.5.0",
         "eslint-plugin-ava": "^13.2.0",
@@ -148,6 +149,12 @@
         "node": ">=6.9.0"
       }
     },
+    "node_modules/@bcoe/v8-coverage": {
+      "version": "0.2.3",
+      "resolved": "https://registry.npmjs.org/@bcoe/v8-coverage/-/v8-coverage-0.2.3.tgz",
+      "integrity": "sha512-0hYQ8SB4Db5zvZB4axdMHGwEaQjkZzFjQiN9LVYvIFB2nSUHW9tYpxWriPrWDASIxiaXax83REcLxuSdnGPZtw==",
+      "dev": true
+    },
     "node_modules/@cspotcode/source-map-support": {
       "version": "0.8.1",
       "resolved": "https://registry.npmjs.org/@cspotcode/source-map-support/-/source-map-support-0.8.1.tgz",
@@ -222,6 +229,15 @@
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       "dev": true
     },
+    "node_modules/@istanbuljs/schema": {
+      "version": "0.1.3",
+      "resolved": "https://registry.npmjs.org/@istanbuljs/schema/-/schema-0.1.3.tgz",
+      "integrity": "sha512-ZXRY4jNvVgSVQ8DL3LTcakaAtXwTVUxE81hslsyD2AtoXW/wVob10HkOJ1X/pAlcI7D+2YoZKg5do8G/w6RYgA==",
+      "dev": true,
+      "engines": {
+        "node": ">=8"
+      }
+    },
     "node_modules/@jridgewell/resolve-uri": {
       "version": "3.1.0",
       "resolved": "https://registry.npmjs.org/@jridgewell/resolve-uri/-/resolve-uri-3.1.0.tgz",
@@ -416,6 +432,12 @@
         "@types/retry": "*"
       }
     },
+    "node_modules/@types/istanbul-lib-coverage": {
+      "version": "2.0.5",
+      "resolved": "https://registry.npmjs.org/@types/istanbul-lib-coverage/-/istanbul-lib-coverage-2.0.5.tgz",
+      "integrity": "sha512-zONci81DZYCZjiLe0r6equvZut0b+dBRPBN5kBDjsONnutYNtJMoWQ9uR2RkL1gLG9NMTzvf+29e5RFfPbeKhQ==",
+      "dev": true
+    },
     "node_modules/@types/json-schema": {
       "version": "7.0.11",
       "resolved": "https://registry.npmjs.org/@types/json-schema/-/json-schema-7.0.11.tgz",
@@ -1136,6 +1158,32 @@
         "node": "^6 || ^7 || ^8 || ^9 || ^10 || ^11 || ^12 || >=13.7"
       }
     },
+    "node_modules/c8": {
+      "version": "8.0.1",
+      "resolved": "https://registry.npmjs.org/c8/-/c8-8.0.1.tgz",
+      "integrity": "sha512-EINpopxZNH1mETuI0DzRA4MZpAUH+IFiRhnmFD3vFr3vdrgxqi3VfE3KL0AIL+zDq8rC9bZqwM/VDmmoe04y7w==",
+      "dev": true,
+      "dependencies": {
+        "@bcoe/v8-coverage": "^0.2.3",
+        "@istanbuljs/schema": "^0.1.3",
+        "find-up": "^5.0.0",
+        "foreground-child": "^2.0.0",
+        "istanbul-lib-coverage": "^3.2.0",
+        "istanbul-lib-report": "^3.0.1",
+        "istanbul-reports": "^3.1.6",
+        "rimraf": "^3.0.2",
+        "test-exclude": "^6.0.0",
+        "v8-to-istanbul": "^9.0.0",
+        "yargs": "^17.7.2",
+        "yargs-parser": "^21.1.1"
+      },
+      "bin": {
+        "c8": "bin/c8.js"
+      },
+      "engines": {
+        "node": ">=12"
+      }
+    },
     "node_modules/call-bind": {
       "version": "1.0.2",
       "resolved": "https://registry.npmjs.org/call-bind/-/call-bind-1.0.2.tgz",
@@ -1415,6 +1463,12 @@
         "node": ">=10.18.0 <11 || >=12.14.0 <13 || >=14"
       }
     },
+    "node_modules/convert-source-map": {
+      "version": "2.0.0",
+      "resolved": "https://registry.npmjs.org/convert-source-map/-/convert-source-map-2.0.0.tgz",
+      "integrity": "sha512-Kvp459HrV2FEJ1CAsi1Ku+MY3kasH19TFykTz2xWmMeq6bk2NU3XXvfJ+Q61m0xktWwt+1HSYf3JZsTms3aRJg==",
+      "dev": true
+    },
     "node_modules/convert-to-spaces": {
       "version": "2.0.1",
       "resolved": "https://registry.npmjs.org/convert-to-spaces/-/convert-to-spaces-2.0.1.tgz",
@@ -2452,6 +2506,19 @@
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       "dev": true
     },
+    "node_modules/foreground-child": {
+      "version": "2.0.0",
+      "resolved": "https://registry.npmjs.org/foreground-child/-/foreground-child-2.0.0.tgz",
+      "integrity": "sha512-dCIq9FpEcyQyXKCkyzmlPTFNgrCzPudOe+mhvJU5zAtlBnGVy2yKxtfsxK2tQBThwq225jcvBjpw1Gr40uzZCA==",
+      "dev": true,
+      "dependencies": {
+        "cross-spawn": "^7.0.0",
+        "signal-exit": "^3.0.2"
+      },
+      "engines": {
+        "node": ">=8.0.0"
+      }
+    },
     "node_modules/fs.realpath": {
       "version": "1.0.0",
       "resolved": "https://registry.npmjs.org/fs.realpath/-/fs.realpath-1.0.0.tgz",
@@ -2704,6 +2771,12 @@
         "url": "https://github.com/sponsors/ljharb"
       }
     },
+    "node_modules/html-escaper": {
+      "version": "2.0.2",
+      "resolved": "https://registry.npmjs.org/html-escaper/-/html-escaper-2.0.2.tgz",
+      "integrity": "sha512-H2iMtd0I4Mt5eYiapRdIDjp+XzelXQ0tFE4JS7YFwFevXXMmOp9myNrUvCg0D6ws8iqkRPBfKHgbwig1SmlLfg==",
+      "dev": true
+    },
     "node_modules/human-signals": {
       "version": "2.1.0",
       "resolved": "https://registry.npmjs.org/human-signals/-/human-signals-2.1.0.tgz",
@@ -3108,6 +3181,42 @@
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       "dev": true
     },
+    "node_modules/istanbul-lib-coverage": {
+      "version": "3.2.0",
+      "resolved": "https://registry.npmjs.org/istanbul-lib-coverage/-/istanbul-lib-coverage-3.2.0.tgz",
+      "integrity": "sha512-eOeJ5BHCmHYvQK7xt9GkdHuzuCGS1Y6g9Gvnx3Ym33fz/HpLRYxiS0wHNr+m/MBC8B647Xt608vCDEvhl9c6Mw==",
+      "dev": true,
+      "engines": {
+        "node": ">=8"
+      }
+    },
+    "node_modules/istanbul-lib-report": {
+      "version": "3.0.1",
+      "resolved": "https://registry.npmjs.org/istanbul-lib-report/-/istanbul-lib-report-3.0.1.tgz",
+      "integrity": "sha512-GCfE1mtsHGOELCU8e/Z7YWzpmybrx/+dSTfLrvY8qRmaY6zXTKWn6WQIjaAFw069icm6GVMNkgu0NzI4iPZUNw==",
+      "dev": true,
+      "dependencies": {
+        "istanbul-lib-coverage": "^3.0.0",
+        "make-dir": "^4.0.0",
+        "supports-color": "^7.1.0"
+      },
+      "engines": {
+        "node": ">=10"
+      }
+    },
+    "node_modules/istanbul-reports": {
+      "version": "3.1.6",
+      "resolved": "https://registry.npmjs.org/istanbul-reports/-/istanbul-reports-3.1.6.tgz",
+      "integrity": "sha512-TLgnMkKg3iTDsQ9PbPTdpfAK2DzjF9mqUG7RMgcQl8oFjad8ob4laGxv5XV5U9MAfx8D6tSJiUyuAwzLicaxlg==",
+      "dev": true,
+      "dependencies": {
+        "html-escaper": "^2.0.0",
+        "istanbul-lib-report": "^3.0.0"
+      },
+      "engines": {
+        "node": ">=8"
+      }
+    },
     "node_modules/js-sdsl": {
       "version": "4.1.5",
       "resolved": "https://registry.npmjs.org/js-sdsl/-/js-sdsl-4.1.5.tgz",
@@ -3274,6 +3383,21 @@
         "node": ">=10"
       }
     },
+    "node_modules/make-dir": {
+      "version": "4.0.0",
+      "resolved": "https://registry.npmjs.org/make-dir/-/make-dir-4.0.0.tgz",
+      "integrity": "sha512-hXdUTZYIVOt1Ex//jAQi+wTZZpUpwBj/0QsOzqegb3rGMMeJiSEu5xLHnYfBrRV4RH2+OCSOO95Is/7x1WJ4bw==",
+      "dev": true,
+      "dependencies": {
+        "semver": "^7.5.3"
+      },
+      "engines": {
+        "node": ">=10"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/sindresorhus"
+      }
+    },
     "node_modules/make-error": {
       "version": "1.3.6",
       "resolved": "https://registry.npmjs.org/make-error/-/make-error-1.3.6.tgz",
@@ -4133,9 +4257,9 @@
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     },
     "node_modules/semver": {
-      "version": "7.3.7",
+      "version": "7.5.4",
-      "resolved": "https://registry.npmjs.org/semver/-/semver-7.3.7.tgz",
+      "resolved": "https://registry.npmjs.org/semver/-/semver-7.5.4.tgz",
-      "integrity": "sha512-QlYTucUYOews+WeEujDoEGziz4K6c47V/Bd+LjSSYcA94p+DmINdf7ncaUinThfvZyu13lN9OY1XDxt8C0Tw0g==",
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       "dependencies": {
         "lru-cache": "^6.0.0"
       },
@@ -4499,6 +4623,20 @@
         "node": ">=8"
       }
     },
+    "node_modules/test-exclude": {
+      "version": "6.0.0",
+      "resolved": "https://registry.npmjs.org/test-exclude/-/test-exclude-6.0.0.tgz",
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+      "dev": true,
+      "dependencies": {
+        "@istanbuljs/schema": "^0.1.2",
+        "glob": "^7.1.4",
+        "minimatch": "^3.0.4"
+      },
+      "engines": {
+        "node": ">=8"
+      }
+    },
     "node_modules/text-table": {
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@@ -4722,6 +4860,30 @@
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       "dev": true
     },
+    "node_modules/v8-to-istanbul": {
+      "version": "9.1.3",
+      "resolved": "https://registry.npmjs.org/v8-to-istanbul/-/v8-to-istanbul-9.1.3.tgz",
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+      "dev": true,
+      "dependencies": {
+        "@jridgewell/trace-mapping": "^0.3.12",
+        "@types/istanbul-lib-coverage": "^2.0.1",
+        "convert-source-map": "^2.0.0"
+      },
+      "engines": {
+        "node": ">=10.12.0"
+      }
+    },
+    "node_modules/v8-to-istanbul/node_modules/@jridgewell/trace-mapping": {
+      "version": "0.3.20",
+      "resolved": "https://registry.npmjs.org/@jridgewell/trace-mapping/-/trace-mapping-0.3.20.tgz",
+      "integrity": "sha512-R8LcPeWZol2zR8mmH3JeKQ6QRCFb7XgUhV9ZlGhHLGyg4wpPiPZNQOOWhFZhxKw8u//yTbNGI42Bx/3paXEQ+Q==",
+      "dev": true,
+      "dependencies": {
+        "@jridgewell/resolve-uri": "^3.1.0",
+        "@jridgewell/sourcemap-codec": "^1.4.14"
+      }
+    },
     "node_modules/webidl-conversions": {
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@@ -4864,9 +5026,9 @@
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     },
     "node_modules/yargs": {
-      "version": "17.6.2",
+      "version": "17.7.2",
-      "resolved": "https://registry.npmjs.org/yargs/-/yargs-17.6.2.tgz",
+      "resolved": "https://registry.npmjs.org/yargs/-/yargs-17.7.2.tgz",
-      "integrity": "sha512-1/9UrdHjDZc0eOU0HxOHoS78C69UD3JRMvzlJ7S79S2nTaWRA/whGCTV8o9e/N/1Va9YIV7Q4sOxD8VV4pCWOw==",
+      "integrity": "sha512-7dSzzRQ++CKnNI/krKnYRV7JKKPUXMEh61soaHKg9mrWEhzFWhFnxPxGl+69cD1Ou63C13NUPCnmIcrvqCuM6w==",
       "dev": true,
       "dependencies": {
         "cliui": "^8.0.1",
@@ -5039,6 +5201,12 @@
         "regenerator-runtime": "^0.13.10"
       }
     },
+    "@bcoe/v8-coverage": {
+      "version": "0.2.3",
+      "resolved": "https://registry.npmjs.org/@bcoe/v8-coverage/-/v8-coverage-0.2.3.tgz",
+      "integrity": "sha512-0hYQ8SB4Db5zvZB4axdMHGwEaQjkZzFjQiN9LVYvIFB2nSUHW9tYpxWriPrWDASIxiaXax83REcLxuSdnGPZtw==",
+      "dev": true
+    },
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       "dev": true
     },
+    "@istanbuljs/schema": {
+      "version": "0.1.3",
+      "resolved": "https://registry.npmjs.org/@istanbuljs/schema/-/schema-0.1.3.tgz",
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+      "dev": true
+    },
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       "version": "3.1.0",
       "resolved": "https://registry.npmjs.org/@jridgewell/resolve-uri/-/resolve-uri-3.1.0.tgz",
@@ -5270,6 +5444,12 @@
         "@types/retry": "*"
       }
     },
+    "@types/istanbul-lib-coverage": {
+      "version": "2.0.5",
+      "resolved": "https://registry.npmjs.org/@types/istanbul-lib-coverage/-/istanbul-lib-coverage-2.0.5.tgz",
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+      "dev": true
+    },
     "@types/json-schema": {
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@@ -5754,6 +5934,26 @@
         "update-browserslist-db": "^1.0.9"
       }
     },
+    "c8": {
+      "version": "8.0.1",
+      "resolved": "https://registry.npmjs.org/c8/-/c8-8.0.1.tgz",
+      "integrity": "sha512-EINpopxZNH1mETuI0DzRA4MZpAUH+IFiRhnmFD3vFr3vdrgxqi3VfE3KL0AIL+zDq8rC9bZqwM/VDmmoe04y7w==",
+      "dev": true,
+      "requires": {
+        "@bcoe/v8-coverage": "^0.2.3",
+        "@istanbuljs/schema": "^0.1.3",
+        "find-up": "^5.0.0",
+        "foreground-child": "^2.0.0",
+        "istanbul-lib-coverage": "^3.2.0",
+        "istanbul-lib-report": "^3.0.1",
+        "istanbul-reports": "^3.1.6",
+        "rimraf": "^3.0.2",
+        "test-exclude": "^6.0.0",
+        "v8-to-istanbul": "^9.0.0",
+        "yargs": "^17.7.2",
+        "yargs-parser": "^21.1.1"
+      }
+    },
     "call-bind": {
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       "resolved": "https://registry.npmjs.org/call-bind/-/call-bind-1.0.2.tgz",
@@ -5961,6 +6161,12 @@
         "well-known-symbols": "^2.0.0"
       }
     },
+    "convert-source-map": {
+      "version": "2.0.0",
+      "resolved": "https://registry.npmjs.org/convert-source-map/-/convert-source-map-2.0.0.tgz",
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+      "dev": true
+    },
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@@ -6732,6 +6938,16 @@
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       "dev": true
     },
+    "foreground-child": {
+      "version": "2.0.0",
+      "resolved": "https://registry.npmjs.org/foreground-child/-/foreground-child-2.0.0.tgz",
+      "integrity": "sha512-dCIq9FpEcyQyXKCkyzmlPTFNgrCzPudOe+mhvJU5zAtlBnGVy2yKxtfsxK2tQBThwq225jcvBjpw1Gr40uzZCA==",
+      "dev": true,
+      "requires": {
+        "cross-spawn": "^7.0.0",
+        "signal-exit": "^3.0.2"
+      }
+    },
     "fs.realpath": {
       "version": "1.0.0",
       "resolved": "https://registry.npmjs.org/fs.realpath/-/fs.realpath-1.0.0.tgz",
@@ -6905,6 +7121,12 @@
         "has-symbols": "^1.0.2"
       }
     },
+    "html-escaper": {
+      "version": "2.0.2",
+      "resolved": "https://registry.npmjs.org/html-escaper/-/html-escaper-2.0.2.tgz",
+      "integrity": "sha512-H2iMtd0I4Mt5eYiapRdIDjp+XzelXQ0tFE4JS7YFwFevXXMmOp9myNrUvCg0D6ws8iqkRPBfKHgbwig1SmlLfg==",
+      "dev": true
+    },
     "human-signals": {
       "version": "2.1.0",
       "resolved": "https://registry.npmjs.org/human-signals/-/human-signals-2.1.0.tgz",
@@ -7171,6 +7393,33 @@
       "integrity": "sha512-RHxMLp9lnKHGHRng9QFhRCMbYAcVpn69smSGcq3f36xjgVVWThj4qqLbTLlq7Ssj8B+fIQ1EuCEGI2lKsyQeIw==",
       "dev": true
     },
+    "istanbul-lib-coverage": {
+      "version": "3.2.0",
+      "resolved": "https://registry.npmjs.org/istanbul-lib-coverage/-/istanbul-lib-coverage-3.2.0.tgz",
+      "integrity": "sha512-eOeJ5BHCmHYvQK7xt9GkdHuzuCGS1Y6g9Gvnx3Ym33fz/HpLRYxiS0wHNr+m/MBC8B647Xt608vCDEvhl9c6Mw==",
+      "dev": true
+    },
+    "istanbul-lib-report": {
+      "version": "3.0.1",
+      "resolved": "https://registry.npmjs.org/istanbul-lib-report/-/istanbul-lib-report-3.0.1.tgz",
+      "integrity": "sha512-GCfE1mtsHGOELCU8e/Z7YWzpmybrx/+dSTfLrvY8qRmaY6zXTKWn6WQIjaAFw069icm6GVMNkgu0NzI4iPZUNw==",
+      "dev": true,
+      "requires": {
+        "istanbul-lib-coverage": "^3.0.0",
+        "make-dir": "^4.0.0",
+        "supports-color": "^7.1.0"
+      }
+    },
+    "istanbul-reports": {
+      "version": "3.1.6",
+      "resolved": "https://registry.npmjs.org/istanbul-reports/-/istanbul-reports-3.1.6.tgz",
+      "integrity": "sha512-TLgnMkKg3iTDsQ9PbPTdpfAK2DzjF9mqUG7RMgcQl8oFjad8ob4laGxv5XV5U9MAfx8D6tSJiUyuAwzLicaxlg==",
+      "dev": true,
+      "requires": {
+        "html-escaper": "^2.0.0",
+        "istanbul-lib-report": "^3.0.0"
+      }
+    },
     "js-sdsl": {
       "version": "4.1.5",
       "resolved": "https://registry.npmjs.org/js-sdsl/-/js-sdsl-4.1.5.tgz",
@@ -7307,6 +7556,15 @@
         "yallist": "^4.0.0"
       }
     },
+    "make-dir": {
+      "version": "4.0.0",
+      "resolved": "https://registry.npmjs.org/make-dir/-/make-dir-4.0.0.tgz",
+      "integrity": "sha512-hXdUTZYIVOt1Ex//jAQi+wTZZpUpwBj/0QsOzqegb3rGMMeJiSEu5xLHnYfBrRV4RH2+OCSOO95Is/7x1WJ4bw==",
+      "dev": true,
+      "requires": {
+        "semver": "^7.5.3"
+      }
+    },
     "make-error": {
       "version": "1.3.6",
       "resolved": "https://registry.npmjs.org/make-error/-/make-error-1.3.6.tgz",
@@ -7873,9 +8131,9 @@
       }
     },
     "semver": {
-      "version": "7.3.7",
+      "version": "7.5.4",
-      "resolved": "https://registry.npmjs.org/semver/-/semver-7.3.7.tgz",
+      "resolved": "https://registry.npmjs.org/semver/-/semver-7.5.4.tgz",
-      "integrity": "sha512-QlYTucUYOews+WeEujDoEGziz4K6c47V/Bd+LjSSYcA94p+DmINdf7ncaUinThfvZyu13lN9OY1XDxt8C0Tw0g==",
+      "integrity": "sha512-1bCSESV6Pv+i21Hvpxp3Dx+pSD8lIPt8uVjRrxAUt/nbswYc+tK6Y2btiULjd4+fnq15PX+nqQDC7Oft7WkwcA==",
       "requires": {
         "lru-cache": "^6.0.0"
       }
@@ -8128,6 +8386,17 @@
       "integrity": "sha512-aoBAniQmmwtcKp/7BzsH8Cxzv8OL736p7v1ihGb5e9DJ9kTwGWHrQrVB5+lfVDzfGrdRzXch+ig7LHaY1JTOrg==",
       "dev": true
     },
+    "test-exclude": {
+      "version": "6.0.0",
+      "resolved": "https://registry.npmjs.org/test-exclude/-/test-exclude-6.0.0.tgz",
+      "integrity": "sha512-cAGWPIyOHU6zlmg88jwm7VRyXnMN7iV68OGAbYDk/Mh/xC/pzVPlQtY6ngoIH/5/tciuhGfvESU8GrHrcxD56w==",
+      "dev": true,
+      "requires": {
+        "@istanbuljs/schema": "^0.1.2",
+        "glob": "^7.1.4",
+        "minimatch": "^3.0.4"
+      }
+    },
     "text-table": {
       "version": "0.2.0",
       "resolved": "https://registry.npmjs.org/text-table/-/text-table-0.2.0.tgz",
@@ -8275,6 +8544,29 @@
       "integrity": "sha512-wa7YjyUGfNZngI/vtK0UHAN+lgDCxBPCylVXGp0zu59Fz5aiGtNXaq3DhIov063MorB+VfufLh3JlF2KdTK3xg==",
       "dev": true
     },
+    "v8-to-istanbul": {
+      "version": "9.1.3",
+      "resolved": "https://registry.npmjs.org/v8-to-istanbul/-/v8-to-istanbul-9.1.3.tgz",
+      "integrity": "sha512-9lDD+EVI2fjFsMWXc6dy5JJzBsVTcQ2fVkfBvncZ6xJWG9wtBhOldG+mHkSL0+V1K/xgZz0JDO5UT5hFwHUghg==",
+      "dev": true,
+      "requires": {
+        "@jridgewell/trace-mapping": "^0.3.12",
+        "@types/istanbul-lib-coverage": "^2.0.1",
+        "convert-source-map": "^2.0.0"
+      },
+      "dependencies": {
+        "@jridgewell/trace-mapping": {
+          "version": "0.3.20",
+          "resolved": "https://registry.npmjs.org/@jridgewell/trace-mapping/-/trace-mapping-0.3.20.tgz",
+          "integrity": "sha512-R8LcPeWZol2zR8mmH3JeKQ6QRCFb7XgUhV9ZlGhHLGyg4wpPiPZNQOOWhFZhxKw8u//yTbNGI42Bx/3paXEQ+Q==",
+          "dev": true,
+          "requires": {
+            "@jridgewell/resolve-uri": "^3.1.0",
+            "@jridgewell/sourcemap-codec": "^1.4.14"
+          }
+        }
+      }
+    },
     "webidl-conversions": {
       "version": "3.0.1",
       "resolved": "https://registry.npmjs.org/webidl-conversions/-/webidl-conversions-3.0.1.tgz",
@@ -8386,9 +8678,9 @@
       "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A=="
     },
     "yargs": {
-      "version": "17.6.2",
+      "version": "17.7.2",
-      "resolved": "https://registry.npmjs.org/yargs/-/yargs-17.6.2.tgz",
+      "resolved": "https://registry.npmjs.org/yargs/-/yargs-17.7.2.tgz",
-      "integrity": "sha512-1/9UrdHjDZc0eOU0HxOHoS78C69UD3JRMvzlJ7S79S2nTaWRA/whGCTV8o9e/N/1Va9YIV7Q4sOxD8VV4pCWOw==",
+      "integrity": "sha512-7dSzzRQ++CKnNI/krKnYRV7JKKPUXMEh61soaHKg9mrWEhzFWhFnxPxGl+69cD1Ou63C13NUPCnmIcrvqCuM6w==",
       "dev": true,
       "requires": {
         "cliui": "^8.0.1",

package.json

@@ -1,6 +1,6 @@
 {
   "name": "install-nextflow-action",
-  "version": "1.3.0",
+  "version": "1.4.0",
   "description": "An action to install Nextflow into a GitHub Actions workflow and make it available for subsequent steps.",
   "main": "lib/src/main.js",
   "scripts": {
@@ -10,7 +10,7 @@
     "lint": "eslint {src,test}/**/*.ts",
     "lint:fix": "eslint --fix {src,test}/**/*.ts",
     "package": "ncc build --source-map --license LICENSE",
-    "test": "ava",
+    "test": "c8 --reporter=lcov ava",
     "all": "npm run build && npm run format && npm run lint && npm run package && npm test"
   },
   "repository": {
@@ -63,6 +63,7 @@
     "@typescript-eslint/parser": "^5.42.1",
     "@vercel/ncc": "^0.34.0",
     "ava": "^5.0.1",
+    "c8": "^8.0.1",
     "eslint": "^8.27.0",
     "eslint-config-prettier": "^8.5.0",
     "eslint-plugin-ava": "^13.2.0",

src/NextflowRelease.ts

@@ -0,0 +1,44 @@
+/**
+ * Houses the pertinent data that GitHub exposes for each Nextflow release
+ */
+export type NextflowRelease = {
+  versionNumber: string
+  isEdge: boolean
+  binaryURL: string
+  allBinaryURL: string
+}
+
+/**
+ * Converts the raw OctoKit data into a structured NextflowRelease
+ * @param data A "release" data struct from OctoKit
+ * @returns `data` converted into a `NextflowRelease`
+ */
+export function nextflow_release(data: object) {
+  const nf_release: NextflowRelease = {
+    versionNumber: data["tag_name"],
+    isEdge: data["prerelease"],
+    binaryURL: nextflow_bin_url(data, false),
+    allBinaryURL: nextflow_bin_url(data, true)
+  }
+  return nf_release
+}
+
+/**
+ * Gets the download URL of a Nextflow binary
+ * @param release A "release" data struct from OctoKit
+ * @param get_all Whether to return the url for the "all" variant of Nextflow
+ * @returns The URL of the Nextflow binary
+ */
+export function nextflow_bin_url(release: object, get_all: boolean): string {
+  const release_assets = release["assets"]
+  const all_asset = release_assets.filter((a: object) => {
+    return a["browser_download_url"].endsWith("-all")
+  })[0]
+  const regular_asset = release_assets.filter((a: object) => {
+    return a["name"] === "nextflow"
+  })[0]
+
+  const dl_asset = get_all ? all_asset : regular_asset
+
+  return dl_asset.browser_download_url
+}

src/OctokitWrapper.ts

@@ -0,0 +1,62 @@
+import { GitHub } from "@actions/github/lib/utils"
+import * as github from "@actions/github"
+import * as core from "@actions/core"
+
+import { NextflowRelease, nextflow_release } from "./NextflowRelease"
+
+const NEXTFLOW_REPO = { owner: "nextflow-io", repo: "nextflow" }
+
+export async function setup_octokit(
+  github_token: string
+): Promise<InstanceType<typeof GitHub>> {
+  let octokit = {} as InstanceType<typeof GitHub>
+  try {
+    octokit = github.getOctokit(github_token)
+  } catch (e: unknown) {
+    if (e instanceof Error) {
+      core.setFailed(
+        `Could not authenticate to GitHub Releases API with provided token\n${e.message}`
+      )
+    }
+  }
+  return octokit
+}
+
+export async function pull_releases(
+  octokit: InstanceType<typeof GitHub>
+): Promise<Array<NextflowRelease>> {
+  const all_release_data: object[] = await all_nf_release_data(octokit)
+  var all_releases: NextflowRelease[] = []
+  all_release_data.forEach(data => {
+    all_releases.push(nextflow_release(data))
+  })
+
+  return all_releases
+}
+
+export async function all_nf_release_data(
+  ok: InstanceType<typeof GitHub>
+): Promise<object[]> {
+  return await ok.paginate(
+    ok.rest.repos.listReleases,
+    NEXTFLOW_REPO,
+    response => response.data
+  )
+}
+
+export async function latest_stable_release_data(
+  ok: InstanceType<typeof GitHub>
+): Promise<object> {
+  const { data: stable_release } = await ok.rest.repos.getLatestRelease(
+    NEXTFLOW_REPO
+  )
+
+  return stable_release
+}
+
+export async function pull_latest_stable_release(
+  ok: InstanceType<typeof GitHub>
+): Promise<NextflowRelease> {
+  const latest_release = await latest_stable_release_data(ok)
+  return nextflow_release(latest_release)
+}

src/functions.ts

@@ -1,41 +1,15 @@
 import * as core from "@actions/core"
-import { GitHub } from "@actions/github/lib/utils"
 import * as tc from "@actions/tool-cache"
 import retry from "async-retry"
 import * as fs from "fs"
 import semver from "semver"
 
-const NEXTFLOW_REPO = { owner: "nextflow-io", repo: "nextflow" }
+import { NextflowRelease } from "./NextflowRelease"
 
-// HACK Private but I want to test this
+function tag_filter(version: string): (NextflowRelease) => Boolean {
-export async function all_nf_releases(
-  ok: InstanceType<typeof GitHub>
-): Promise<object[]> {
-  return await ok.paginate(
-    ok.rest.repos.listReleases,
-    NEXTFLOW_REPO,
-    response => response.data
-  )
-}
-
-// HACK Private but I want to test this
-export async function latest_stable_release_data(
-  ok: InstanceType<typeof GitHub>
-): Promise<object> {
-  const { data: stable_release } = await ok.rest.repos.getLatestRelease(
-    NEXTFLOW_REPO
-  )
-
-  return stable_release
-}
-
-export async function release_data(
-  version: string,
-  ok: InstanceType<typeof GitHub>
-): Promise<object> {
   // Setup tag-based filtering
-  let filter = (r: object): boolean => {
+  let filter = (r: NextflowRelease): boolean => {
-    return semver.satisfies(r["tag_name"], version, true)
+    return semver.satisfies(r.versionNumber, version, true)
   }
 
   // Check if the user passed a 'latest*' tag, and override filtering
@@ -44,52 +18,45 @@ export async function release_data(
     if (version.includes("-everything")) {
       // No filtering
       // eslint-disable-next-line @typescript-eslint/no-unused-vars
-      filter = (r: object) => {
+      filter = (r: NextflowRelease) => {
         return true
       }
     } else if (version.includes("-edge")) {
-      filter = r => {
+      filter = (r: NextflowRelease) => {
-        return r["tag_name"].endsWith("-edge")
+        return r.versionNumber.endsWith("-edge")
       }
     } else {
-      // This is special: passing 'latest' or 'latest-stable' allows us to use
+      filter = (r: NextflowRelease) => {
-      // the latest stable GitHub release direct from the API
+        return !r.isEdge
-      const stable_release = await latest_stable_release_data(ok)
-      return stable_release
       }
     }
+  }
+  return filter
+}
 
-  // Get all the releases
+export async function get_nextflow_release(
-  const all_releases: object[] = await all_nf_releases(ok)
+  version: string,
-
+  releases: Array<NextflowRelease>
-  const matching_releases = all_releases.filter(filter)
+): Promise<NextflowRelease> {
+  // Filter the releases
+  const filter = tag_filter(version)
+  const matching_releases = releases.filter(filter)
 
   matching_releases.sort((x, y) => {
     // HACK IDK why the value flip is necessary with the return
-    return semver.compare(x["tag_name"], y["tag_name"], true) * -1
+    return semver.compare(x.versionNumber, y.versionNumber, true) * -1
   })
 
   return matching_releases[0]
 }
 
-export function nextflow_bin_url(release: object, get_all: boolean): string {
-  const release_assets = release["assets"]
-  const all_asset = release_assets.filter((a: object) => {
-    return a["browser_download_url"].endsWith("-all")
-  })[0]
-  const regular_asset = release_assets.filter((a: object) => {
-    return a["name"] === "nextflow"
-  })[0]
-
-  const dl_asset = get_all ? all_asset : regular_asset
-
-  return dl_asset.browser_download_url
-}
-
 export async function install_nextflow(
-  url: string,
+  release: NextflowRelease,
-  version: string
+  get_all: boolean
 ): Promise<string> {
+  const url = get_all ? release.allBinaryURL : release.binaryURL
+  const version = release.versionNumber
+
   core.debug(`Downloading Nextflow from ${url}`)
   const nf_dl_path = await retry(
     // eslint-disable-next-line @typescript-eslint/no-unused-vars

src/main.ts

@@ -1,7 +1,5 @@
 import * as core from "@actions/core"
 import * as exec from "@actions/exec"
-import * as github from "@actions/github"
-import { GitHub } from "@actions/github/lib/utils"
 import * as tc from "@actions/tool-cache"
 import * as fs from "fs"
 import semver from "semver"
@@ -9,12 +7,15 @@ import semver from "semver"
 import {
   check_cache,
   install_nextflow,
-  nextflow_bin_url,
+  get_nextflow_release
-  release_data
 } from "./functions"
 
+import { NextflowRelease } from "./NextflowRelease"
+import { pull_releases, setup_octokit } from "./OctokitWrapper"
+
 async function run(): Promise<void> {
-  // Set environment variables
+  // CAPSULE_LOG leads to a bunch of boilerplate being output to the logs: turn
+  // it off
   core.exportVariable("CAPSULE_LOG", "none")
 
   // Read in the arguments
@@ -28,25 +29,16 @@ async function run(): Promise<void> {
   }
 
   // Setup the API
-  let octokit: InstanceType<typeof GitHub> | undefined
+  const octokit = await setup_octokit(token)
-  try {
+
-    octokit = github.getOctokit(token)
+  const releases = await pull_releases(octokit)
-  } catch (e: unknown) {
-    if (e instanceof Error) {
-      core.setFailed(
-        `Could not authenticate to GitHub Releases API with provided token\n${e.message}`
-      )
-    }
-  }
 
   // Get the release info for the desired release
-  let release = {}
+  let release = {} as NextflowRelease
   let resolved_version = ""
   try {
-    if (octokit !== undefined) {
+    release = await get_nextflow_release(version, releases)
-      release = await release_data(version, octokit)
+    resolved_version = release.versionNumber
-    }
-    resolved_version = release["tag_name"]
     core.info(
       `Input version '${version}' resolved to Nextflow ${release["name"]}`
     )
@@ -58,20 +50,10 @@ async function run(): Promise<void> {
     }
   }
 
-  // Get the download url for the desired release
-  let url = ""
-  try {
-    url = nextflow_bin_url(release, get_all)
-    core.info(`Preparing to download from ${url}`)
-  } catch (e: unknown) {
-    if (e instanceof Error) {
-      core.setFailed(`Could not parse the download URL\n${e.message}`)
-    }
-  }
   try {
     // Download Nextflow and add it to path
     if (!check_cache(resolved_version)) {
-      const nf_install_path = await install_nextflow(url, resolved_version)
+      const nf_install_path = await install_nextflow(release, get_all)
       const cleaned_version = String(semver.clean(resolved_version, true))
       const nf_path = await tc.cacheDir(
         nf_install_path,
@@ -94,9 +76,8 @@ async function run(): Promise<void> {
     await exec.exec("nextflow", ["help"])
   } catch (e: unknown) {
     if (e instanceof Error) {
-      core.warning(
+      // fail workflow if Nextflow run does not succeed
-        "Nextflow appears to have installed correctly, but an error was thrown while running it."
+      core.setFailed(`Could not run 'nextflow help'. Error: ${e.message}`)
-      )
     }
   }
 }

test/functions.ts

@@ -1,37 +1,113 @@
-import * as github from "@actions/github"
+import test from "ava" // eslint-disable-line import/no-unresolved
-import { GitHub } from "@actions/github/lib/utils"
-import anyTest, { TestFn } from "ava" // eslint-disable-line import/no-unresolved
 
 import * as functions from "../src/functions"
-import { getReleaseTag, getToken } from "./utils"
+import { NextflowRelease } from "../src/NextflowRelease"
 
-const test = anyTest as TestFn<{
+// The Nextflow releases we are going to use for testing follow a regular
-  token: string
+// pattern: create a mock function to bootstrap some test data without repeating
-  octokit: InstanceType<typeof GitHub>
+// ourselves
-}>
+function nf_release_gen(version_number: string): NextflowRelease {
-
+  const is_edge = version_number.endsWith("-edge")
-test.before(t => {
+  const release: NextflowRelease = {
-  const first = true
+    versionNumber: version_number,
-  const current_token = getToken(first)
+    isEdge: is_edge,
-  t.context = {
+    binaryURL: `https://github.com/nextflow-io/nextflow/releases/download/${version_number}/nextflow`,
-    token: current_token,
+    allBinaryURL: `https://github.com/nextflow-io/nextflow/releases/download/${version_number}/nextflow-${version_number.replace(
-    octokit: github.getOctokit(current_token)
+      "v",
+      ""
+    )}-all`
   }
-})
+  return release
+}
 
-test("all_nf_releases", async t => {
+// A mock set of Nextflow releases
-  const result = await functions.all_nf_releases(t.context["octokit"])
+const edge_is_newer = [
-  t.is(typeof result, "object")
+  nf_release_gen("v23.09.1-edge"),
-})
+  nf_release_gen("v23.04.3"),
+  nf_release_gen("v23.04.2")
+]
+const edge_is_older = [
+  nf_release_gen("v23.04.3"),
+  nf_release_gen("v23.04.2"),
+  nf_release_gen("v23.03.0-edge")
+]
 
-test("lastest_stable_release_data", async t => {
+/*
-  const result = await functions.latest_stable_release_data(
+  The whole reason this action exists is to handle the cases where a final
-    t.context["octokit"]
+  release is the "bleeding edge" release, rather than the "edge" release, even
+  though that's what the name would imply. Therefore, we need to test that the
+  'latest-everything' parameter can find the correct one regardless of whether
+  an "edge" release or a stable release is the true latest
+*/
+const release_filter_macro = test.macro(
+  async (
+    t,
+    input_version: string,
+    expected_version: string,
+    releases: Array<NextflowRelease>
+  ) => {
+    const matched_release = await functions.get_nextflow_release(
+      input_version,
+      releases
     )
-  t.is(typeof result, "object")
+    t.is(matched_release.versionNumber, expected_version)
-  const expected = await getReleaseTag("nextflow-io/nextflow", false)
+  }
-  t.is(result["tag_name"], expected)
+)
-})
+test(
+  "Latest-everything install with newer edge release",
+  release_filter_macro,
+  "latest-everything",
+  "v23.09.1-edge",
+  edge_is_newer
+)
+test(
+  "Latest-everything install with older edge release",
+  release_filter_macro,
+  "latest-everything",
+  "v23.04.3",
+  edge_is_older
+)
+test(
+  "Latest-edge install with newer edge release",
+  release_filter_macro,
+  "latest-edge",
+  "v23.09.1-edge",
+  edge_is_newer
+)
+test(
+  "Latest-edge install with older edge release",
+  release_filter_macro,
+  "latest-edge",
+  "v23.03.0-edge",
+  edge_is_older
+)
+test(
+  "Latest-stable install with newer edge release",
+  release_filter_macro,
+  "latest",
+  "v23.04.3",
+  edge_is_newer
+)
+test(
+  "Latest-stable install with older edge release",
+  release_filter_macro,
+  "latest",
+  "v23.04.3",
+  edge_is_older
+)
+test(
+  "Fully versioned tag release",
+  release_filter_macro,
+  "v23.04.2",
+  "v23.04.2",
+  edge_is_newer
+)
+test(
+  "Partially versioned tag release",
+  release_filter_macro,
+  "v23.04",
+  "v23.04.3",
+  edge_is_newer
+)
 
-test.todo("nextflow_bin_url")
 test.todo("install_nextflow")

test/releasedata.ts

@@ -2,8 +2,9 @@ import * as github from "@actions/github"
 import { GitHub } from "@actions/github/lib/utils"
 import anyTest, { TestFn } from "ava" // eslint-disable-line import/no-unresolved
 
-import { release_data } from "../src/functions"
+import { getToken } from "./utils"
-import { getReleaseTag, getToken } from "./utils"
+import { all_nf_release_data } from "../src/OctokitWrapper"
+import { nextflow_bin_url } from "../src/NextflowRelease"
 
 const test = anyTest as TestFn<{
   token: string
@@ -19,22 +20,22 @@ test.before(t => {
   }
 })
 
-const macro = test.macro(async (t, version: string) => {
+const exists_macro = test.macro(async (t, object_name: string) => {
-  let expected
+  const all_releases = await all_nf_release_data(t.context.octokit)
-  if (version === "latest-stable") {
+  const first_release = all_releases[0]
-    expected = await getReleaseTag("nextflow-io/nextflow", false)
+  t.assert(first_release.hasOwnProperty(object_name))
-  } else if (version === "latest-edge") {
-    expected = await getReleaseTag("nextflow-io/nextflow", true)
-  } else if (version === "latest-everything") {
-    expected = await getReleaseTag("nextflow-io/nextflow", undefined)
-  } else {
-    expected = version
-  }
-  const result = await release_data(version, t.context["octokit"])
-  t.is(result["tag_name"], expected)
 })
 
-test("hard version", macro, "v22.10.2")
+test("OctoKit returns tag", exists_macro, "tag_name")
-test("latest-stable", macro, "latest-stable")
+test("Octokit returns prerelease", exists_macro, "prerelease")
-test("latest-edge", macro, "latest-edge")
+test("Octokit returns assets", exists_macro, "assets")
-test("latest-everything", macro, "latest-everything")
+
+const binary_url_macro = test.macro(async (t, get_all: boolean) => {
+  const all_releases = await all_nf_release_data(t.context.octokit)
+  const first_release = all_releases[0]
+  const url = nextflow_bin_url(first_release, get_all)
+  t.notThrows(() => new URL(url))
+})
+
+test("Nextflow binary URL valid", binary_url_macro, false)
+test("Nextflow 'all' binary URL valid", binary_url_macro, true)