test: Update version checking tests

test: Update API consistency tests
refactor: Update main script to use NextflowRelease objects
2024-11-23 10:09:54 +00:00 · 2023-12-23 13:16:43 -07:00 · 2023-12-23 13:16:42 -07:00 · 2023-12-23 13:16:41 -07:00 · 2023-12-23 13:16:39 -07:00 · 2023-12-23 13:16:38 -07:00
11 changed files with 589 additions and 157 deletions
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@ -26,3 +26,6 @@ jobs:
      - run: npm run test
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      - uses: codecov/codecov-action@v3
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@ -7,9 +7,12 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

 ## [Unreleased]

+## [1.4.0] - 2023-08-12
+
 ## Changed

 - If `fs.renameSync` fails (e.g. because source and destination files are on different partitions), try `fs.copySync` and `fs.unlinkSync` instead (#14).
+- Fail instead of warn, when `nextflow help`` doesn't work (#23).

 ## Fixed

@ -55,7 +58,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - GitHub Actions workflow to test Nextflow installation and downstream usage
 - Documentation and license files

-[unreleased]: https://github.com/nf-core/setup-nextflow/compare/v1.3.0...HEAD
+[unreleased]: https://github.com/nf-core/setup-nextflow/compare/v1.4.0...HEAD
+[1.4.0]: https://github.com/nf-core/setup-nextflow/compare/v1.3.0...v1.4.0
 [1.3.0]: https://github.com/nf-core/setup-nextflow/compare/v1.2.0...v1.3.0
 [1.2.0]: https://github.com/nf-core/setup-nextflow/compare/v1.1.1...v1.2.0
 [1.1.0]: https://github.com/nf-core/setup-nextflow/compare/v1.0.1...v1.1.0
--- a/README.md
+++ b/README.md
@ -1,6 +1,7 @@
 # ![nf-core/setup-nextflow](docs/images/nfcore-setupnextflow_logo.png#gh-light-mode-only) ![nf-core/setup-nextflow](docs/images/nfcore-setupnextflow_logo_dark.png#gh-dark-mode-only)

 [![Testing](https://github.com/nf-core/setup-nextflow/actions/workflows/example.yml/badge.svg)](https://github.com/nf-core/setup-nextflow/actions/workflows/example.yml)
+[![codecov](https://codecov.io/gh/nf-core/setup-nextflow/branch/master/graph/badge.svg)](https://codecov.io/gh/nf-core/setup-nextflow)
 [![MIT License](https://img.shields.io/github/license/nf-core/setup-nextflow?logo=opensourceinitiative)](https://github.com/nf-core/setup-nextflow/blob/master/LICENSE)
 [![GitHub tag (latest by date)](https://img.shields.io/github/v/tag/nf-core/setup-nextflow?logo=github)](https://github.com/nf-core/setup-nextflow/releases/latest)
 [![Get from GitHub Actions](https://img.shields.io/static/v1?label=actions&message=marketplace&color=green&logo=githubactions)](https://github.com/marketplace/actions/setup-nextflow)
--- a/package-lock.json
+++ b/package-lock.json
@ -1,12 +1,12 @@
 {
  "name": "install-nextflow-action",
-  "version": "1.3.0",
+  "version": "1.4.0",
  "lockfileVersion": 2,
  "requires": true,
  "packages": {
    "": {
      "name": "install-nextflow-action",
-      "version": "1.2.0",
+      "version": "1.4.0",
      "license": "MIT",
      "dependencies": {
        "@actions/core": "^1.8.2",
@ -26,6 +26,7 @@
        "@typescript-eslint/parser": "^5.42.1",
        "@vercel/ncc": "^0.34.0",
        "ava": "^5.0.1",
+        "c8": "^8.0.1",
        "eslint": "^8.27.0",
        "eslint-config-prettier": "^8.5.0",
        "eslint-plugin-ava": "^13.2.0",
@ -148,6 +149,12 @@
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+      "dev": true
+    },
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@ -416,6 +432,12 @@
        "@types/retry": "*"
      }
    },
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+      "resolved": "https://registry.npmjs.org/@types/istanbul-lib-coverage/-/istanbul-lib-coverage-2.0.5.tgz",
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@ -1136,6 +1158,32 @@
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+        "v8-to-istanbul": "^9.0.0",
+        "yargs": "^17.7.2",
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+        "c8": "bin/c8.js"
+      },
+      "engines": {
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+      }
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@ -1415,6 +1463,12 @@
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@ -2704,6 +2771,12 @@
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@ -3274,6 +3383,21 @@
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@ -4133,9 +4257,9 @@
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@ -4499,6 +4623,20 @@
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@ -5039,6 +5201,12 @@
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@ -5270,6 +5444,12 @@
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@ -5754,6 +5934,26 @@
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@ -5961,6 +6161,12 @@
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      "resolved": "https://registry.npmjs.org/convert-to-spaces/-/convert-to-spaces-2.0.1.tgz",
@ -6732,6 +6938,16 @@
      "integrity": "sha512-5nqDSxl8nn5BSNxyR3n4I6eDmbolI6WT+QqR547RwxQapgjQBmtktdP+HTBb/a/zLsbzERTONyUB5pefh5TtjQ==",
      "dev": true
    },
+    "foreground-child": {
+      "version": "2.0.0",
+      "resolved": "https://registry.npmjs.org/foreground-child/-/foreground-child-2.0.0.tgz",
+      "integrity": "sha512-dCIq9FpEcyQyXKCkyzmlPTFNgrCzPudOe+mhvJU5zAtlBnGVy2yKxtfsxK2tQBThwq225jcvBjpw1Gr40uzZCA==",
+      "dev": true,
+      "requires": {
+        "cross-spawn": "^7.0.0",
+        "signal-exit": "^3.0.2"
+      }
+    },
    "fs.realpath": {
      "version": "1.0.0",
      "resolved": "https://registry.npmjs.org/fs.realpath/-/fs.realpath-1.0.0.tgz",
@ -6905,6 +7121,12 @@
        "has-symbols": "^1.0.2"
      }
    },
+    "html-escaper": {
+      "version": "2.0.2",
+      "resolved": "https://registry.npmjs.org/html-escaper/-/html-escaper-2.0.2.tgz",
+      "integrity": "sha512-H2iMtd0I4Mt5eYiapRdIDjp+XzelXQ0tFE4JS7YFwFevXXMmOp9myNrUvCg0D6ws8iqkRPBfKHgbwig1SmlLfg==",
+      "dev": true
+    },
    "human-signals": {
      "version": "2.1.0",
      "resolved": "https://registry.npmjs.org/human-signals/-/human-signals-2.1.0.tgz",
@ -7171,6 +7393,33 @@
      "integrity": "sha512-RHxMLp9lnKHGHRng9QFhRCMbYAcVpn69smSGcq3f36xjgVVWThj4qqLbTLlq7Ssj8B+fIQ1EuCEGI2lKsyQeIw==",
      "dev": true
    },
+    "istanbul-lib-coverage": {
+      "version": "3.2.0",
+      "resolved": "https://registry.npmjs.org/istanbul-lib-coverage/-/istanbul-lib-coverage-3.2.0.tgz",
+      "integrity": "sha512-eOeJ5BHCmHYvQK7xt9GkdHuzuCGS1Y6g9Gvnx3Ym33fz/HpLRYxiS0wHNr+m/MBC8B647Xt608vCDEvhl9c6Mw==",
+      "dev": true
+    },
+    "istanbul-lib-report": {
+      "version": "3.0.1",
+      "resolved": "https://registry.npmjs.org/istanbul-lib-report/-/istanbul-lib-report-3.0.1.tgz",
+      "integrity": "sha512-GCfE1mtsHGOELCU8e/Z7YWzpmybrx/+dSTfLrvY8qRmaY6zXTKWn6WQIjaAFw069icm6GVMNkgu0NzI4iPZUNw==",
+      "dev": true,
+      "requires": {
+        "istanbul-lib-coverage": "^3.0.0",
+        "make-dir": "^4.0.0",
+        "supports-color": "^7.1.0"
+      }
+    },
+    "istanbul-reports": {
+      "version": "3.1.6",
+      "resolved": "https://registry.npmjs.org/istanbul-reports/-/istanbul-reports-3.1.6.tgz",
+      "integrity": "sha512-TLgnMkKg3iTDsQ9PbPTdpfAK2DzjF9mqUG7RMgcQl8oFjad8ob4laGxv5XV5U9MAfx8D6tSJiUyuAwzLicaxlg==",
+      "dev": true,
+      "requires": {
+        "html-escaper": "^2.0.0",
+        "istanbul-lib-report": "^3.0.0"
+      }
+    },
    "js-sdsl": {
      "version": "4.1.5",
      "resolved": "https://registry.npmjs.org/js-sdsl/-/js-sdsl-4.1.5.tgz",
@ -7307,6 +7556,15 @@
        "yallist": "^4.0.0"
      }
    },
+    "make-dir": {
+      "version": "4.0.0",
+      "resolved": "https://registry.npmjs.org/make-dir/-/make-dir-4.0.0.tgz",
+      "integrity": "sha512-hXdUTZYIVOt1Ex//jAQi+wTZZpUpwBj/0QsOzqegb3rGMMeJiSEu5xLHnYfBrRV4RH2+OCSOO95Is/7x1WJ4bw==",
+      "dev": true,
+      "requires": {
+        "semver": "^7.5.3"
+      }
+    },
    "make-error": {
      "version": "1.3.6",
      "resolved": "https://registry.npmjs.org/make-error/-/make-error-1.3.6.tgz",
@ -7873,9 +8131,9 @@
      }
    },
    "semver": {
-      "version": "7.3.7",
-      "resolved": "https://registry.npmjs.org/semver/-/semver-7.3.7.tgz",
-      "integrity": "sha512-QlYTucUYOews+WeEujDoEGziz4K6c47V/Bd+LjSSYcA94p+DmINdf7ncaUinThfvZyu13lN9OY1XDxt8C0Tw0g==",
+      "version": "7.5.4",
+      "resolved": "https://registry.npmjs.org/semver/-/semver-7.5.4.tgz",
+      "integrity": "sha512-1bCSESV6Pv+i21Hvpxp3Dx+pSD8lIPt8uVjRrxAUt/nbswYc+tK6Y2btiULjd4+fnq15PX+nqQDC7Oft7WkwcA==",
      "requires": {
        "lru-cache": "^6.0.0"
      }
@ -8128,6 +8386,17 @@
      "integrity": "sha512-aoBAniQmmwtcKp/7BzsH8Cxzv8OL736p7v1ihGb5e9DJ9kTwGWHrQrVB5+lfVDzfGrdRzXch+ig7LHaY1JTOrg==",
      "dev": true
    },
+    "test-exclude": {
+      "version": "6.0.0",
+      "resolved": "https://registry.npmjs.org/test-exclude/-/test-exclude-6.0.0.tgz",
+      "integrity": "sha512-cAGWPIyOHU6zlmg88jwm7VRyXnMN7iV68OGAbYDk/Mh/xC/pzVPlQtY6ngoIH/5/tciuhGfvESU8GrHrcxD56w==",
+      "dev": true,
+      "requires": {
+        "@istanbuljs/schema": "^0.1.2",
+        "glob": "^7.1.4",
+        "minimatch": "^3.0.4"
+      }
+    },
    "text-table": {
      "version": "0.2.0",
      "resolved": "https://registry.npmjs.org/text-table/-/text-table-0.2.0.tgz",
@ -8275,6 +8544,29 @@
      "integrity": "sha512-wa7YjyUGfNZngI/vtK0UHAN+lgDCxBPCylVXGp0zu59Fz5aiGtNXaq3DhIov063MorB+VfufLh3JlF2KdTK3xg==",
      "dev": true
    },
+    "v8-to-istanbul": {
+      "version": "9.1.3",
+      "resolved": "https://registry.npmjs.org/v8-to-istanbul/-/v8-to-istanbul-9.1.3.tgz",
+      "integrity": "sha512-9lDD+EVI2fjFsMWXc6dy5JJzBsVTcQ2fVkfBvncZ6xJWG9wtBhOldG+mHkSL0+V1K/xgZz0JDO5UT5hFwHUghg==",
+      "dev": true,
+      "requires": {
+        "@jridgewell/trace-mapping": "^0.3.12",
+        "@types/istanbul-lib-coverage": "^2.0.1",
+        "convert-source-map": "^2.0.0"
+      },
+      "dependencies": {
+        "@jridgewell/trace-mapping": {
+          "version": "0.3.20",
+          "resolved": "https://registry.npmjs.org/@jridgewell/trace-mapping/-/trace-mapping-0.3.20.tgz",
+          "integrity": "sha512-R8LcPeWZol2zR8mmH3JeKQ6QRCFb7XgUhV9ZlGhHLGyg4wpPiPZNQOOWhFZhxKw8u//yTbNGI42Bx/3paXEQ+Q==",
+          "dev": true,
+          "requires": {
+            "@jridgewell/resolve-uri": "^3.1.0",
+            "@jridgewell/sourcemap-codec": "^1.4.14"
+          }
+        }
+      }
+    },
    "webidl-conversions": {
      "version": "3.0.1",
      "resolved": "https://registry.npmjs.org/webidl-conversions/-/webidl-conversions-3.0.1.tgz",
@ -8386,9 +8678,9 @@
      "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A=="
    },
    "yargs": {
-      "version": "17.6.2",
-      "resolved": "https://registry.npmjs.org/yargs/-/yargs-17.6.2.tgz",
-      "integrity": "sha512-1/9UrdHjDZc0eOU0HxOHoS78C69UD3JRMvzlJ7S79S2nTaWRA/whGCTV8o9e/N/1Va9YIV7Q4sOxD8VV4pCWOw==",
+      "version": "17.7.2",
+      "resolved": "https://registry.npmjs.org/yargs/-/yargs-17.7.2.tgz",
+      "integrity": "sha512-7dSzzRQ++CKnNI/krKnYRV7JKKPUXMEh61soaHKg9mrWEhzFWhFnxPxGl+69cD1Ou63C13NUPCnmIcrvqCuM6w==",
      "dev": true,
      "requires": {
        "cliui": "^8.0.1",
--- a/package.json
+++ b/package.json
@ -1,6 +1,6 @@
 {
  "name": "install-nextflow-action",
-  "version": "1.3.0",
+  "version": "1.4.0",
  "description": "An action to install Nextflow into a GitHub Actions workflow and make it available for subsequent steps.",
  "main": "lib/src/main.js",
  "scripts": {
@ -10,7 +10,7 @@
    "lint": "eslint {src,test}/**/*.ts",
    "lint:fix": "eslint --fix {src,test}/**/*.ts",
    "package": "ncc build --source-map --license LICENSE",
-    "test": "ava",
+    "test": "c8 --reporter=lcov ava",
    "all": "npm run build && npm run format && npm run lint && npm run package && npm test"
  },
  "repository": {
@ -63,6 +63,7 @@
    "@typescript-eslint/parser": "^5.42.1",
    "@vercel/ncc": "^0.34.0",
    "ava": "^5.0.1",
+    "c8": "^8.0.1",
    "eslint": "^8.27.0",
    "eslint-config-prettier": "^8.5.0",
    "eslint-plugin-ava": "^13.2.0",
--- a/src/NextflowRelease.ts
+++ b/src/NextflowRelease.ts
@ -0,0 +1,44 @@
+/**
+ * Houses the pertinent data that GitHub exposes for each Nextflow release
+ */
+export type NextflowRelease = {
+  versionNumber: string
+  isEdge: boolean
+  binaryURL: string
+  allBinaryURL: string
+}
+
+/**
+ * Converts the raw OctoKit data into a structured NextflowRelease
+ * @param data A "release" data struct from OctoKit
+ * @returns `data` converted into a `NextflowRelease`
+ */
+export function nextflow_release(data: object) {
+  const nf_release: NextflowRelease = {
+    versionNumber: data["tag_name"],
+    isEdge: data["prerelease"],
+    binaryURL: nextflow_bin_url(data, false),
+    allBinaryURL: nextflow_bin_url(data, true)
+  }
+  return nf_release
+}
+
+/**
+ * Gets the download URL of a Nextflow binary
+ * @param release A "release" data struct from OctoKit
+ * @param get_all Whether to return the url for the "all" variant of Nextflow
+ * @returns The URL of the Nextflow binary
+ */
+export function nextflow_bin_url(release: object, get_all: boolean): string {
+  const release_assets = release["assets"]
+  const all_asset = release_assets.filter((a: object) => {
+    return a["browser_download_url"].endsWith("-all")
+  })[0]
+  const regular_asset = release_assets.filter((a: object) => {
+    return a["name"] === "nextflow"
+  })[0]
+
+  const dl_asset = get_all ? all_asset : regular_asset
+
+  return dl_asset.browser_download_url
+}
--- a/src/OctokitWrapper.ts
+++ b/src/OctokitWrapper.ts
@ -0,0 +1,62 @@
+import { GitHub } from "@actions/github/lib/utils"
+import * as github from "@actions/github"
+import * as core from "@actions/core"
+
+import { NextflowRelease, nextflow_release } from "./NextflowRelease"
+
+const NEXTFLOW_REPO = { owner: "nextflow-io", repo: "nextflow" }
+
+export async function setup_octokit(
+  github_token: string
+): Promise<InstanceType<typeof GitHub>> {
+  let octokit = {} as InstanceType<typeof GitHub>
+  try {
+    octokit = github.getOctokit(github_token)
+  } catch (e: unknown) {
+    if (e instanceof Error) {
+      core.setFailed(
+        `Could not authenticate to GitHub Releases API with provided token\n${e.message}`
+      )
+    }
+  }
+  return octokit
+}
+
+export async function pull_releases(
+  octokit: InstanceType<typeof GitHub>
+): Promise<Array<NextflowRelease>> {
+  const all_release_data: object[] = await all_nf_release_data(octokit)
+  var all_releases: NextflowRelease[] = []
+  all_release_data.forEach(data => {
+    all_releases.push(nextflow_release(data))
+  })
+
+  return all_releases
+}
+
+export async function all_nf_release_data(
+  ok: InstanceType<typeof GitHub>
+): Promise<object[]> {
+  return await ok.paginate(
+    ok.rest.repos.listReleases,
+    NEXTFLOW_REPO,
+    response => response.data
+  )
+}
+
+export async function latest_stable_release_data(
+  ok: InstanceType<typeof GitHub>
+): Promise<object> {
+  const { data: stable_release } = await ok.rest.repos.getLatestRelease(
+    NEXTFLOW_REPO
+  )
+
+  return stable_release
+}
+
+export async function pull_latest_stable_release(
+  ok: InstanceType<typeof GitHub>
+): Promise<NextflowRelease> {
+  const latest_release = await latest_stable_release_data(ok)
+  return nextflow_release(latest_release)
+}
--- a/src/functions.ts
+++ b/src/functions.ts
@ -1,41 +1,15 @@
 import * as core from "@actions/core"
-import { GitHub } from "@actions/github/lib/utils"
 import * as tc from "@actions/tool-cache"
 import retry from "async-retry"
 import * as fs from "fs"
 import semver from "semver"

-const NEXTFLOW_REPO = { owner: "nextflow-io", repo: "nextflow" }
+import { NextflowRelease } from "./NextflowRelease"

-// HACK Private but I want to test this
-export async function all_nf_releases(
-  ok: InstanceType<typeof GitHub>
-): Promise<object[]> {
-  return await ok.paginate(
-    ok.rest.repos.listReleases,
-    NEXTFLOW_REPO,
-    response => response.data
-  )
-}
-
-// HACK Private but I want to test this
-export async function latest_stable_release_data(
-  ok: InstanceType<typeof GitHub>
-): Promise<object> {
-  const { data: stable_release } = await ok.rest.repos.getLatestRelease(
-    NEXTFLOW_REPO
-  )
-
-  return stable_release
-}
-
-export async function release_data(
-  version: string,
-  ok: InstanceType<typeof GitHub>
-): Promise<object> {
+function tag_filter(version: string): (NextflowRelease) => Boolean {
  // Setup tag-based filtering
-  let filter = (r: object): boolean => {
-    return semver.satisfies(r["tag_name"], version, true)
+  let filter = (r: NextflowRelease): boolean => {
+    return semver.satisfies(r.versionNumber, version, true)
  }

  // Check if the user passed a 'latest*' tag, and override filtering
@ -44,52 +18,45 @@ export async function release_data(
    if (version.includes("-everything")) {
      // No filtering
      // eslint-disable-next-line @typescript-eslint/no-unused-vars
-      filter = (r: object) => {
+      filter = (r: NextflowRelease) => {
        return true
      }
    } else if (version.includes("-edge")) {
-      filter = r => {
-        return r["tag_name"].endsWith("-edge")
+      filter = (r: NextflowRelease) => {
+        return r.versionNumber.endsWith("-edge")
      }
    } else {
-      // This is special: passing 'latest' or 'latest-stable' allows us to use
-      // the latest stable GitHub release direct from the API
-      const stable_release = await latest_stable_release_data(ok)
-      return stable_release
+      filter = (r: NextflowRelease) => {
+        return !r.isEdge
      }
    }
+  }
+  return filter
+}

-  // Get all the releases
-  const all_releases: object[] = await all_nf_releases(ok)
-
-  const matching_releases = all_releases.filter(filter)
+export async function get_nextflow_release(
+  version: string,
+  releases: Array<NextflowRelease>
+): Promise<NextflowRelease> {
+  // Filter the releases
+  const filter = tag_filter(version)
+  const matching_releases = releases.filter(filter)

  matching_releases.sort((x, y) => {
    // HACK IDK why the value flip is necessary with the return
-    return semver.compare(x["tag_name"], y["tag_name"], true) * -1
+    return semver.compare(x.versionNumber, y.versionNumber, true) * -1
  })

  return matching_releases[0]
 }

-export function nextflow_bin_url(release: object, get_all: boolean): string {
-  const release_assets = release["assets"]
-  const all_asset = release_assets.filter((a: object) => {
-    return a["browser_download_url"].endsWith("-all")
-  })[0]
-  const regular_asset = release_assets.filter((a: object) => {
-    return a["name"] === "nextflow"
-  })[0]
-
-  const dl_asset = get_all ? all_asset : regular_asset
-
-  return dl_asset.browser_download_url
-}
-
 export async function install_nextflow(
-  url: string,
-  version: string
+  release: NextflowRelease,
+  get_all: boolean
 ): Promise<string> {
+  const url = get_all ? release.allBinaryURL : release.binaryURL
+  const version = release.versionNumber
+
  core.debug(`Downloading Nextflow from ${url}`)
  const nf_dl_path = await retry(
    // eslint-disable-next-line @typescript-eslint/no-unused-vars
--- a/src/main.ts
+++ b/src/main.ts
@ -1,7 +1,5 @@
 import * as core from "@actions/core"
 import * as exec from "@actions/exec"
-import * as github from "@actions/github"
-import { GitHub } from "@actions/github/lib/utils"
 import * as tc from "@actions/tool-cache"
 import * as fs from "fs"
 import semver from "semver"
@ -9,12 +7,15 @@ import semver from "semver"
 import {
  check_cache,
  install_nextflow,
-  nextflow_bin_url,
-  release_data
+  get_nextflow_release
 } from "./functions"

+import { NextflowRelease } from "./NextflowRelease"
+import { pull_releases, setup_octokit } from "./OctokitWrapper"
+
 async function run(): Promise<void> {
-  // Set environment variables
+  // CAPSULE_LOG leads to a bunch of boilerplate being output to the logs: turn
+  // it off
  core.exportVariable("CAPSULE_LOG", "none")

  // Read in the arguments
@ -28,25 +29,16 @@ async function run(): Promise<void> {
  }

  // Setup the API
-  let octokit: InstanceType<typeof GitHub> | undefined
-  try {
-    octokit = github.getOctokit(token)
-  } catch (e: unknown) {
-    if (e instanceof Error) {
-      core.setFailed(
-        `Could not authenticate to GitHub Releases API with provided token\n${e.message}`
-      )
-    }
-  }
+  const octokit = await setup_octokit(token)
+
+  const releases = await pull_releases(octokit)

  // Get the release info for the desired release
-  let release = {}
+  let release = {} as NextflowRelease
  let resolved_version = ""
  try {
-    if (octokit !== undefined) {
-      release = await release_data(version, octokit)
-    }
-    resolved_version = release["tag_name"]
+    release = await get_nextflow_release(version, releases)
+    resolved_version = release.versionNumber
    core.info(
      `Input version '${version}' resolved to Nextflow ${release["name"]}`
    )
@ -58,20 +50,10 @@ async function run(): Promise<void> {
    }
  }

-  // Get the download url for the desired release
-  let url = ""
-  try {
-    url = nextflow_bin_url(release, get_all)
-    core.info(`Preparing to download from ${url}`)
-  } catch (e: unknown) {
-    if (e instanceof Error) {
-      core.setFailed(`Could not parse the download URL\n${e.message}`)
-    }
-  }
  try {
    // Download Nextflow and add it to path
    if (!check_cache(resolved_version)) {
-      const nf_install_path = await install_nextflow(url, resolved_version)
+      const nf_install_path = await install_nextflow(release, get_all)
      const cleaned_version = String(semver.clean(resolved_version, true))
      const nf_path = await tc.cacheDir(
        nf_install_path,
@ -94,9 +76,8 @@ async function run(): Promise<void> {
    await exec.exec("nextflow", ["help"])
  } catch (e: unknown) {
    if (e instanceof Error) {
-      core.warning(
-        "Nextflow appears to have installed correctly, but an error was thrown while running it."
-      )
+      // fail workflow if Nextflow run does not succeed
+      core.setFailed(`Could not run 'nextflow help'. Error: ${e.message}`)
    }
  }
 }
--- a/test/functions.ts
+++ b/test/functions.ts
@ -1,37 +1,113 @@
-import * as github from "@actions/github"
-import { GitHub } from "@actions/github/lib/utils"
-import anyTest, { TestFn } from "ava" // eslint-disable-line import/no-unresolved
+import test from "ava" // eslint-disable-line import/no-unresolved

 import * as functions from "../src/functions"
-import { getReleaseTag, getToken } from "./utils"
+import { NextflowRelease } from "../src/NextflowRelease"

-const test = anyTest as TestFn<{
-  token: string
-  octokit: InstanceType<typeof GitHub>
-}>
-
-test.before(t => {
-  const first = true
-  const current_token = getToken(first)
-  t.context = {
-    token: current_token,
-    octokit: github.getOctokit(current_token)
+// The Nextflow releases we are going to use for testing follow a regular
+// pattern: create a mock function to bootstrap some test data without repeating
+// ourselves
+function nf_release_gen(version_number: string): NextflowRelease {
+  const is_edge = version_number.endsWith("-edge")
+  const release: NextflowRelease = {
+    versionNumber: version_number,
+    isEdge: is_edge,
+    binaryURL: `https://github.com/nextflow-io/nextflow/releases/download/${version_number}/nextflow`,
+    allBinaryURL: `https://github.com/nextflow-io/nextflow/releases/download/${version_number}/nextflow-${version_number.replace(
+      "v",
+      ""
+    )}-all`
  }
-})
+  return release
+}

-test("all_nf_releases", async t => {
-  const result = await functions.all_nf_releases(t.context["octokit"])
-  t.is(typeof result, "object")
-})
+// A mock set of Nextflow releases
+const edge_is_newer = [
+  nf_release_gen("v23.09.1-edge"),
+  nf_release_gen("v23.04.3"),
+  nf_release_gen("v23.04.2")
+]
+const edge_is_older = [
+  nf_release_gen("v23.04.3"),
+  nf_release_gen("v23.04.2"),
+  nf_release_gen("v23.03.0-edge")
+]

-test("lastest_stable_release_data", async t => {
-  const result = await functions.latest_stable_release_data(
-    t.context["octokit"]
+/*
+  The whole reason this action exists is to handle the cases where a final
+  release is the "bleeding edge" release, rather than the "edge" release, even
+  though that's what the name would imply. Therefore, we need to test that the
+  'latest-everything' parameter can find the correct one regardless of whether
+  an "edge" release or a stable release is the true latest
+*/
+const release_filter_macro = test.macro(
+  async (
+    t,
+    input_version: string,
+    expected_version: string,
+    releases: Array<NextflowRelease>
+  ) => {
+    const matched_release = await functions.get_nextflow_release(
+      input_version,
+      releases
    )
-  t.is(typeof result, "object")
-  const expected = await getReleaseTag("nextflow-io/nextflow", false)
-  t.is(result["tag_name"], expected)
-})
+    t.is(matched_release.versionNumber, expected_version)
+  }
+)
+test(
+  "Latest-everything install with newer edge release",
+  release_filter_macro,
+  "latest-everything",
+  "v23.09.1-edge",
+  edge_is_newer
+)
+test(
+  "Latest-everything install with older edge release",
+  release_filter_macro,
+  "latest-everything",
+  "v23.04.3",
+  edge_is_older
+)
+test(
+  "Latest-edge install with newer edge release",
+  release_filter_macro,
+  "latest-edge",
+  "v23.09.1-edge",
+  edge_is_newer
+)
+test(
+  "Latest-edge install with older edge release",
+  release_filter_macro,
+  "latest-edge",
+  "v23.03.0-edge",
+  edge_is_older
+)
+test(
+  "Latest-stable install with newer edge release",
+  release_filter_macro,
+  "latest",
+  "v23.04.3",
+  edge_is_newer
+)
+test(
+  "Latest-stable install with older edge release",
+  release_filter_macro,
+  "latest",
+  "v23.04.3",
+  edge_is_older
+)
+test(
+  "Fully versioned tag release",
+  release_filter_macro,
+  "v23.04.2",
+  "v23.04.2",
+  edge_is_newer
+)
+test(
+  "Partially versioned tag release",
+  release_filter_macro,
+  "v23.04",
+  "v23.04.3",
+  edge_is_newer
+)

-test.todo("nextflow_bin_url")
 test.todo("install_nextflow")
--- a/test/releasedata.ts
+++ b/test/releasedata.ts
@ -2,8 +2,9 @@ import * as github from "@actions/github"
 import { GitHub } from "@actions/github/lib/utils"
 import anyTest, { TestFn } from "ava" // eslint-disable-line import/no-unresolved

-import { release_data } from "../src/functions"
-import { getReleaseTag, getToken } from "./utils"
+import { getToken } from "./utils"
+import { all_nf_release_data } from "../src/OctokitWrapper"
+import { nextflow_bin_url } from "../src/NextflowRelease"

 const test = anyTest as TestFn<{
  token: string
@ -19,22 +20,22 @@ test.before(t => {
  }
 })

-const macro = test.macro(async (t, version: string) => {
-  let expected
-  if (version === "latest-stable") {
-    expected = await getReleaseTag("nextflow-io/nextflow", false)
-  } else if (version === "latest-edge") {
-    expected = await getReleaseTag("nextflow-io/nextflow", true)
-  } else if (version === "latest-everything") {
-    expected = await getReleaseTag("nextflow-io/nextflow", undefined)
-  } else {
-    expected = version
-  }
-  const result = await release_data(version, t.context["octokit"])
-  t.is(result["tag_name"], expected)
+const exists_macro = test.macro(async (t, object_name: string) => {
+  const all_releases = await all_nf_release_data(t.context.octokit)
+  const first_release = all_releases[0]
+  t.assert(first_release.hasOwnProperty(object_name))
 })

-test("hard version", macro, "v22.10.2")
-test("latest-stable", macro, "latest-stable")
-test("latest-edge", macro, "latest-edge")
-test("latest-everything", macro, "latest-everything")
+test("OctoKit returns tag", exists_macro, "tag_name")
+test("Octokit returns prerelease", exists_macro, "prerelease")
+test("Octokit returns assets", exists_macro, "assets")
+
+const binary_url_macro = test.macro(async (t, get_all: boolean) => {
+  const all_releases = await all_nf_release_data(t.context.octokit)
+  const first_release = all_releases[0]
+  const url = nextflow_bin_url(first_release, get_all)
+  t.notThrows(() => new URL(url))
+})
+
+test("Nextflow binary URL valid", binary_url_macro, false)
+test("Nextflow 'all' binary URL valid", binary_url_macro, true)
Author	SHA1	Message	Date
Thomas A. Christensen II	2920d35b27	test: Update version checking tests	2023-12-23 13:16:43 -07:00
Thomas A. Christensen II	a0c983c7c0	test: Update API consistency tests	2023-12-23 13:16:42 -07:00
Thomas A. Christensen II	ad13909a9c	refactor: Update main script to use NextflowRelease objects	2023-12-23 13:16:41 -07:00
Thomas A. Christensen II	91a673d1c0	refactor: Outsource API calls to OctokitWrapper	2023-12-23 13:16:39 -07:00
Thomas A. Christensen II	9c201e4232	docs: Clarify why CAPSULE_LOG is set	2023-12-23 13:16:38 -07:00
Thomas A. Christensen II	063c2b071a	refactor: Add and remove imports from main script	2023-12-23 13:16:38 -07:00
Thomas A. Christensen II	f6ca4d60bb	refactor: Make install_nextflow work using NextflowRelease objects	2023-12-23 13:16:37 -07:00
Thomas A. Christensen II	5d8e8fd6f5	refactor: Make get_nextflow_release work using NextflowRelease objects	2023-12-23 13:16:36 -07:00
Thomas A. Christensen II	0b5ecde5fa	refactor: Make tag filtering work on NextflowRelease objects	2023-12-23 13:16:34 -07:00
Thomas A. Christensen II	18999426ee	refactor!: Move all Octokit code to own file Separation of concerns. We want to completely separate the internals of Octokit from this application, so move any reference/call to Octokit into its own file to symbolize that.	2023-12-23 13:16:32 -07:00
Thomas A. Christensen II	d45224364c	feat: Add nextflow_release function WIth the goal being to convert Octokit data into NextflowRelease objects, create a function that can do that in one line.	2023-12-23 13:16:30 -07:00
Thomas A. Christensen II	c7120cfa01	refactor: Move nextflow_bin_url function to NextflowRelease.ts Nextflow binary URLs should be stored in the new NextflowRelease object, so it should essentially be private for the NextflowRelease type. Move the function to that file to signify that (but retain export for testing purposes).	2023-12-23 13:16:29 -07:00
Thomas A. Christensen II	4b078199d1	feat: Add NextflowRelease type	2023-12-23 13:16:28 -07:00
Thomas A. Christensen II	d736e9561d	docs: Add codecov badge to README	2023-10-31 01:42:06 +00:00
Thomas A. Christensen II	71753bca1d	feat: Add codecov action to test workflow	2023-10-31 01:42:06 +00:00
Thomas A. Christensen II	4499488e7d	feat: Add coverage reporting to test protocol	2023-10-31 01:42:06 +00:00
Thomas A. Christensen II	1f1a43fb20	chore: Add c8 to dev dependencies	2023-10-31 01:42:06 +00:00
Thomas A. Christensen II	99243fb566	chore: Bump version number in package files	2023-10-26 02:45:41 +00:00
Thomas A. Christensen II	b9b7d187dd	chore: Update CHANGELOG for v1.4.0	2023-10-26 02:45:41 +00:00
Edmund Miller	441990da28	Merge pull request #23 from mashehu/break-on-error Fail instead of warn, when `nextflow help` doesn't work	2023-10-11 13:36:11 -05:00
mashehu	7e43c4af0e	Fail instead of warn, when `nextflow help` doesn't work	2023-10-11 16:29:12 +02:00