# ![nf-core/setup-nextflow](docs/images/nfcore-setupnextflow_logo.png#gh-light-mode-only) ![nf-core/setup-nextflow](docs/images/nfcore-setupnextflow_logo_dark.png#gh-dark-mode-only) [![Testing](https://github.com/nf-core/setup-nextflow/actions/workflows/example.yml/badge.svg)](https://github.com/nf-core/setup-nextflow/actions/workflows/example.yml) [![codecov](https://codecov.io/gh/nf-core/setup-nextflow/branch/master/graph/badge.svg)](https://codecov.io/gh/nf-core/setup-nextflow) [![MIT License](https://img.shields.io/github/license/nf-core/setup-nextflow?logo=opensourceinitiative)](https://github.com/nf-core/setup-nextflow/blob/master/LICENSE) [![GitHub tag (latest by date)](https://img.shields.io/github/v/tag/nf-core/setup-nextflow?logo=github)](https://github.com/nf-core/setup-nextflow/releases/latest) [![Get from GitHub Actions](https://img.shields.io/static/v1?label=actions&message=marketplace&color=green&logo=githubactions)](https://github.com/marketplace/actions/setup-nextflow) An action to install [Nextflow](https://nextflow.io) into a GitHub Actions workflow and make it available for subsequent steps. ## Quick start ```yaml name: Example workflow on: push jobs: example: runs-on: ubuntu-latest steps: - uses: actions/checkout@v3 - uses: nf-core/setup-nextflow@v1 - run: nextflow run ${GITHUB_WORKSPACE} ``` ## Inputs All inputs are optional! :sunglasses: By default, this action will install the [latest stable release](https://nextflow.io/docs/latest/getstarted.html#stable-edge-releases) of Nextflow. You can optionally pick a different version, or choose to install all versions. ### `version` > **default: `latest`** A version string to specify the version of Nextflow to install. This version number will try to resolve using [npm's semantic versioning](https://github.com/npm/node-semver), so - `version: 21` - `version: 21.10` - `version: 21.10.6` will all download Nextflow version 21.10.6 as of 13 June 2022. Since Nextflow does not use true semantic versioning, you should **always** specify at least the minor version (e.g. `version: 21.10`). Edge releases are resolved as pre-release, see for more details. In short, in nearly all cases, passing an `-edge` release to this action will need to specify the _exact_ edge release targeted. There are three (technically four) aliases to assist in choosing up-to-date Nextflow versions. - `version: latest-stable` (alias `version: latest`) This will download the latest _stable_ release of Nextflow. - `version: latest-edge` This will download the latest _edge_ release of Nextflow. Note that edge releases may be _older_ than the latest stable release. See https://github.com/nextflow-io/nextflow/issues/2467 - `version: latest-everything` This will download the latest release of Nextflow, regardless of stable/edge status. ### `all` > **default: `false`** A boolean deciding whether to download the "all versions" distribution of Nextflow. May be useful for running tests against multiple versions downstream. ## Outputs There are no outputs from this action. ## Why was this action made? [Slack link](https://nfcore.slack.com/archives/CE56GDKN0/p1655210460795839) You may be asking, why not just a few yaml lines? ```yaml - name: Install Nextflow env: NXF_VER: ${{ matrix.NXF_VER }} run: | wget -qO- get.nextflow.io | bash sudo mv nextflow /usr/local/bin/ ``` The versioning. From the Nextflow install script you can't get `latest-edge` or `latest-everything` for example.