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16 lines
1.2 KiB
Markdown
16 lines
1.2 KiB
Markdown
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# Samtools
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[![Container source](https://img.shields.io/static/v1?label=Container%20Source&message=GitHub&color=lightgrey&logo=github&style=flat-square)](https://github.com/MillironX/singularity-builds/tree/master/samtools)
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[![VarScan source](https://img.shields.io/static/v1?label=Samtools%20Source&message=GitHub&color=lightgrey&logo=github&style=flat-square)](https://github.com/samtools/samtools)
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[![Version 1.13](https://img.shields.io/static/v1?label=Latest%20version&message=1.13&color=yellowgreen&logo=linuxcontainers&style=flat-square)](https://cloud.sylabs.io/library/millironx/default/samtools)
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[![Docs](https://img.shields.io/static/v1?label=Docs&message=man/web&color=blue&style=flat-square)](https://www.htslib.org/doc/samtools.html)
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[![Alpine base](https://img.shields.io/static/v1?label=Base%20image&message=Alpine&color=0d597f&logo=alpinelinux&style=flat-square)](https://www.alpinelinux.org/)
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Samtools is a set of utilities that manipulate alignments in the SAM (Sequence Alignment/Map), BAM, and CRAM formats. It converts between the formats, does sorting, merging and indexing, and can retrieve reads in any regions swiftly.
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## Tools installed
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### samtools
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- `samtools`
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