singularity-builds/samtools/README.md

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2021-08-17 16:21:23 +00:00
# Samtools
[![Container source](https://img.shields.io/static/v1?label=Container%20Source&message=GitHub&color=lightgrey&logo=github&style=flat-square)](https://github.com/MillironX/singularity-builds/tree/master/samtools)
[![VarScan source](https://img.shields.io/static/v1?label=Samtools%20Source&message=GitHub&color=lightgrey&logo=github&style=flat-square)](https://github.com/samtools/samtools)
[![Version 1.13](https://img.shields.io/static/v1?label=Latest%20version&message=1.13&color=yellowgreen&logo=linuxcontainers&style=flat-square)](https://cloud.sylabs.io/library/millironx/default/samtools)
[![Docs](https://img.shields.io/static/v1?label=Docs&message=man/web&color=blue&style=flat-square)](https://www.htslib.org/doc/samtools.html)
[![Alpine base](https://img.shields.io/static/v1?label=Base%20image&message=Alpine&color=0d597f&logo=alpinelinux&style=flat-square)](https://www.alpinelinux.org/)
Samtools is a set of utilities that manipulate alignments in the SAM (Sequence Alignment/Map), BAM, and CRAM formats. It converts between the formats, does sorting, merging and indexing, and can retrieve reads in any regions swiftly.
## Tools installed
### samtools
- `samtools`