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50 lines
1 KiB
Modula-2
50 lines
1 KiB
Modula-2
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Bootstrap: library
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From: default/centos:latest
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%post
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# Quiet perl down
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export LC_ALL=C
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# Install package files
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dnf install dnf-plugins-core -y
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dnf copr enable millironx/velvet -y
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dnf install velvet-1.2.10 procps -y
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# Clean up
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dnf remove dnf-plugins-core -y
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dnf autoremove -y
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dnf clean all
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%environment
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export LC_ALL=C
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%test
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# We can use bash notation here, since /bin/sh is symlinked to bash in CentOS
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CMDS=('bash' 'ps' 'velvetg' 'velveth')
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for CMD in "${CMDS[@]}"; do
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if ! command -v "$CMD"; then
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echo "command $CMD not found!"
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FAILED_TESTS=1
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fi
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done
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# Abort if a test failed
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if [ -n "$FAILED_TESTS" ]; then
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exit 1
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fi
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%labels
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Author 25492070+MillironX@users.noreply.github.com
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SoftwareVersion 1.2.10
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SingularityDefinitionVersion 1
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%help
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Velvet
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======
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Sequence assembler for very short reads
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For more help, see
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- <https://www.ebi.ac.uk/~zerbino/velvet/>
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- <https://github.com/MillironX/velvet-copr>
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- <https://github.com/MillironX/singularity-builds>
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