mirror of
https://github.com/MillironX/singularity-builds.git
synced 2024-11-22 09:49:56 +00:00
78 lines
2.8 KiB
Docker
78 lines
2.8 KiB
Docker
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FROM mgibio/bam-readcount:1.0.0
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## Copied from https://github.com/docker-library/julia/blob/master/1.6/buster/Dockerfile
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RUN set -eux; \
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apt-get update; \
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apt-get install -y --no-install-recommends \
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ca-certificates \
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# ERROR: no download agent available; install curl, wget, or fetch
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curl \
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; \
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rm -rf /var/lib/apt/lists/*
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ENV JULIA_PATH /usr/local/julia
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ENV PATH $JULIA_PATH/bin:$PATH
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# https://julialang.org/juliareleases.asc
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# Julia (Binary signing key) <buildbot@julialang.org>
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ENV JULIA_GPG 3673DF529D9049477F76B37566E3C7DC03D6E495
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# https://julialang.org/downloads/
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ENV JULIA_VERSION 1.6.3
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RUN set -eux; \
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\
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savedAptMark="$(apt-mark showmanual)"; \
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if ! command -v gpg > /dev/null; then \
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apt-get update; \
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apt-get install -y --no-install-recommends \
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gnupg \
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dirmngr \
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; \
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rm -rf /var/lib/apt/lists/*; \
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fi; \
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\
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# https://julialang.org/downloads/#julia-command-line-version
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# https://julialang-s3.julialang.org/bin/checksums/julia-1.6.3.sha256
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# this "case" statement is generated via "update.sh"
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dpkgArch="$(dpkg --print-architecture)"; \
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case "${dpkgArch##*-}" in \
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# amd64
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amd64) tarArch='x86_64'; dirArch='x64'; sha256='c7459c334cd7c3e4a297baf52535937c6bad640e60882f9201a73bab9394314b' ;; \
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# arm32v7
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armhf) tarArch='armv7l'; dirArch='armv7l'; sha256='7cf08affbad206bd3c1ef8bc117bf0aa6ac95d1666bf4c06f9d530cff29b2067' ;; \
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# arm64v8
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arm64) tarArch='aarch64'; dirArch='aarch64'; sha256='df1a7e96f83b60fda54fd14713a373e37ac2d80fd11dbd708a77c8a22ab86e25' ;; \
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# i386
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i386) tarArch='i686'; dirArch='x86'; sha256='06e3d64813e4ba6019d8d79e918c48af4943700bd1eb689c481d82a64f8c280a' ;; \
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# ppc64le
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ppc64el) tarArch='ppc64le'; dirArch='ppc64le'; sha256='a3cb6f58ee93bbd3bd72ecd45b9f37bf5e16e9c0ef30ba17c809ec7cbb84ee96' ;; \
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*) echo >&2 "error: current architecture ($dpkgArch) does not have a corresponding Julia binary release"; exit 1 ;; \
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esac; \
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\
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folder="$(echo "$JULIA_VERSION" | cut -d. -f1-2)"; \
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curl -fL -o julia.tar.gz.asc "https://julialang-s3.julialang.org/bin/linux/${dirArch}/${folder}/julia-${JULIA_VERSION}-linux-${tarArch}.tar.gz.asc"; \
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curl -fL -o julia.tar.gz "https://julialang-s3.julialang.org/bin/linux/${dirArch}/${folder}/julia-${JULIA_VERSION}-linux-${tarArch}.tar.gz"; \
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\
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echo "${sha256} *julia.tar.gz" | sha256sum -c -; \
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\
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export GNUPGHOME="$(mktemp -d)"; \
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gpg --batch --keyserver keyserver.ubuntu.com --recv-keys "$JULIA_GPG"; \
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gpg --batch --verify julia.tar.gz.asc julia.tar.gz; \
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command -v gpgconf > /dev/null && gpgconf --kill all; \
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rm -rf "$GNUPGHOME" julia.tar.gz.asc; \
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\
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mkdir "$JULIA_PATH"; \
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tar -xzf julia.tar.gz -C "$JULIA_PATH" --strip-components 1; \
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rm julia.tar.gz; \
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\
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apt-mark auto '.*' > /dev/null; \
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[ -z "$savedAptMark" ] || apt-mark manual $savedAptMark; \
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apt-get purge -y --auto-remove -o APT::AutoRemove::RecommendsImportant=false; \
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\
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# smoke test
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julia --version
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CMD ["julia"]
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