singularity-builds/sniffles/README.md

# Sniffles

[![Container source](https://img.shields.io/static/v1?label=Container%20Source&message=GitHub&color=lightgrey&logo=github&style=flat-square)](https://github.com/MillironX/singularity-builds/tree/master/sniffles)
[![Sniffles source](https://img.shields.io/static/v1?label=Sniffles%20Source&message=GitHub&color=lightgrey&logo=github&style=flat-square)](https://github.com/fritzsedlazeck/Sniffles)
[![Version 1.0.12b](https://img.shields.io/static/v1?label=Latest%20version&message=v1.0.12b&color=yellowgreen&logo=linuxcontainers&style=flat-square)](https://cloud.sylabs.io/library/millironx/default/sniffles)
[![Docs](https://img.shields.io/static/v1?label=Docs&message=wiki&color=blue&style=flat-square)](https://github.com/fritzsedlazeck/Sniffles/wiki)
[![Alpine base](https://img.shields.io/static/v1?label=Base%20image&message=Alpine&color=0d597f&logo=alpinelinux&style=flat-square)](https://www.alpinelinux.org/)

Sniffles is a structural variation caller using third generation sequencing
(PacBio or Oxford Nanopore). It detects all types of SVs (10bp+) using
evidence from split-read alignments, high-mismatch regions, and coverage
analysis.

## Tools installed

### Sniffles

- `sniffles`
- `sniffles-debug`