From 2e84ca354380e30b31a66a624252f3b809f3909c Mon Sep 17 00:00:00 2001
From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com>
Date: Mon, 15 Nov 2021 12:37:48 -0600
Subject: [PATCH] Move julia_bam-readcounts to its own branch

Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
---
 julia_bam-readcounts/Dockerfile | 78 ---------------------------------
 1 file changed, 78 deletions(-)
 delete mode 100644 julia_bam-readcounts/Dockerfile

diff --git a/julia_bam-readcounts/Dockerfile b/julia_bam-readcounts/Dockerfile
deleted file mode 100644
index 411f5c5..0000000
--- a/julia_bam-readcounts/Dockerfile
+++ /dev/null
@@ -1,78 +0,0 @@
-FROM mgibio/bam-readcount:1.0.0
-
-
-## Copied from https://github.com/docker-library/julia/blob/master/1.6/buster/Dockerfile
-RUN set -eux; \
-	apt-get update; \
-	apt-get install -y --no-install-recommends \
-		ca-certificates \
-# ERROR: no download agent available; install curl, wget, or fetch
-		curl \
-		git \
-	; \
-	rm -rf /var/lib/apt/lists/*
-
-ENV JULIA_PATH /usr/local/julia
-ENV PATH $JULIA_PATH/bin:$PATH
-
-# https://julialang.org/juliareleases.asc
-# Julia (Binary signing key) <buildbot@julialang.org>
-ENV JULIA_GPG 3673DF529D9049477F76B37566E3C7DC03D6E495
-
-# https://julialang.org/downloads/
-ENV JULIA_VERSION 1.6.3
-
-RUN set -eux; \
-	\
-	savedAptMark="$(apt-mark showmanual)"; \
-	if ! command -v gpg > /dev/null; then \
-		apt-get update; \
-		apt-get install -y --no-install-recommends \
-			gnupg \
-			dirmngr \
-		; \
-		rm -rf /var/lib/apt/lists/*; \
-	fi; \
-	\
-# https://julialang.org/downloads/#julia-command-line-version
-# https://julialang-s3.julialang.org/bin/checksums/julia-1.6.3.sha256
-# this "case" statement is generated via "update.sh"
-	dpkgArch="$(dpkg --print-architecture)"; \
-	case "${dpkgArch##*-}" in \
-# amd64
-		amd64) tarArch='x86_64'; dirArch='x64'; sha256='c7459c334cd7c3e4a297baf52535937c6bad640e60882f9201a73bab9394314b' ;; \
-# arm32v7
-		armhf) tarArch='armv7l'; dirArch='armv7l'; sha256='7cf08affbad206bd3c1ef8bc117bf0aa6ac95d1666bf4c06f9d530cff29b2067' ;; \
-# arm64v8
-		arm64) tarArch='aarch64'; dirArch='aarch64'; sha256='df1a7e96f83b60fda54fd14713a373e37ac2d80fd11dbd708a77c8a22ab86e25' ;; \
-# i386
-		i386) tarArch='i686'; dirArch='x86'; sha256='06e3d64813e4ba6019d8d79e918c48af4943700bd1eb689c481d82a64f8c280a' ;; \
-# ppc64le
-		ppc64el) tarArch='ppc64le'; dirArch='ppc64le'; sha256='a3cb6f58ee93bbd3bd72ecd45b9f37bf5e16e9c0ef30ba17c809ec7cbb84ee96' ;; \
-		*) echo >&2 "error: current architecture ($dpkgArch) does not have a corresponding Julia binary release"; exit 1 ;; \
-	esac; \
-	\
-	folder="$(echo "$JULIA_VERSION" | cut -d. -f1-2)"; \
-	curl -fL -o julia.tar.gz.asc "https://julialang-s3.julialang.org/bin/linux/${dirArch}/${folder}/julia-${JULIA_VERSION}-linux-${tarArch}.tar.gz.asc"; \
-	curl -fL -o julia.tar.gz     "https://julialang-s3.julialang.org/bin/linux/${dirArch}/${folder}/julia-${JULIA_VERSION}-linux-${tarArch}.tar.gz"; \
-	\
-	echo "${sha256} *julia.tar.gz" | sha256sum -c -; \
-	\
-	export GNUPGHOME="$(mktemp -d)"; \
-	gpg --batch --keyserver keyserver.ubuntu.com --recv-keys "$JULIA_GPG"; \
-	gpg --batch --verify julia.tar.gz.asc julia.tar.gz; \
-	command -v gpgconf > /dev/null && gpgconf --kill all; \
-	rm -rf "$GNUPGHOME" julia.tar.gz.asc; \
-	\
-	mkdir "$JULIA_PATH"; \
-	tar -xzf julia.tar.gz -C "$JULIA_PATH" --strip-components 1; \
-	rm julia.tar.gz; \
-	\
-	apt-mark auto '.*' > /dev/null; \
-	[ -z "$savedAptMark" ] || apt-mark manual $savedAptMark; \
-	apt-get purge -y --auto-remove -o APT::AutoRemove::RecommendsImportant=false; \
-	\
-# smoke test
-	julia --version
-
-CMD ["julia"]