diff --git a/varscan/README.md b/varscan/README.md new file mode 100644 index 0000000..165923c --- /dev/null +++ b/varscan/README.md @@ -0,0 +1,19 @@ +# VarScan + +[![Container source](https://img.shields.io/static/v1?label=Container%20Source&message=GitHub&color=lightgrey&logo=github&style=flat-square)](https://github.com/MillironX/singularity-builds/tree/master/varscan) +[![VarScan source](https://img.shields.io/static/v1?label=VarScan%20Source&message=GitHub&color=lightgrey&logo=github&style=flat-square)](https://github.com/dkoboldt/varscan) +[![Version v2.4.4](https://img.shields.io/static/v1?label=Latest%20version&message=v2.4.4&color=yellowgreen&logo=linuxcontainers&style=flat-square)](https://cloud.sylabs.io/library/millironx/default/varscan) +[![Docs](https://img.shields.io/static/v1?label=Docs&message=gh-pages&color=blue&style=flat-square)](https://dkoboldt.github.io/varscan/) +[![Alpine base](https://img.shields.io/static/v1?label=Base%20image&message=Alpine&color=0d597f&logo=alpinelinux&style=flat-square)](https://www.alpinelinux.org/) + +VarScan is a platform-independent mutation caller for targeted, exome, and whole-genome resequencing data generated on Illumina, SOLiD, Life/PGM, Roche/454, and similar instruments. + +## Tools installed + +### samtools + +- `samtools` + +### VarScan + +- `varscan`