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.. | ||
assembly_improvement.def | ||
README.md |
Assembly Improvement
Take in an assembly in FASTA format, reads in FASTQ format, and make the assembly better by scaffolding and gap filling.
Tools installed
SSPACE
SSPACE_Basic.pl
GapFiller
GapFiller
Abacas
abacas.pl
SGA
sga
improve_assembly
improve_assembly
diginorm_with_khmer
fill_gaps_with_gapfiller
order_contigs_with_abacas
read_correction_with_sga
scaffold_with_sspace