2022-04-22 13:24:10 +00:00
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name: "centrifuge_kreport"
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description: Creates Kraken-style reports from centrifuge out files
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keywords:
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- metagenomics
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tools:
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- centrifuge:
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description: Centrifuge is a classifier for metagenomic sequences.
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homepage: https://ccb.jhu.edu/software/centrifuge/
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documentation: https://ccb.jhu.edu/software/centrifuge/manual.shtml
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doi: 10.1101/gr.210641.116
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licence: ["GPL v3"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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2022-07-27 12:42:35 +00:00
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- report:
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2022-04-22 13:24:10 +00:00
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type: file
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2022-07-27 12:42:35 +00:00
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description: File containing the centrifuge classification report
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2022-04-22 13:24:10 +00:00
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pattern: "*.{txt}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- kreport:
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type: file
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description: |
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File containing kraken-style report from centrifuge
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out files.
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pattern: "*.{txt}"
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authors:
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- "@sofstam"
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- "@jfy133"
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