2022-05-03 07:28:46 +00:00
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name: minimap2_index
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description: Provides fasta index required by minimap2 alignment.
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keywords:
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- index
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- fasta
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- reference
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tools:
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- minimap2:
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description: |
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A versatile pairwise aligner for genomic and spliced nucleotide sequences.
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homepage: https://github.com/lh3/minimap2
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documentation: https://github.com/lh3/minimap2#uguide
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licence: ["MIT"]
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input:
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2022-10-05 10:24:18 +00:00
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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2022-05-03 07:28:46 +00:00
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- fasta:
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type: file
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description: |
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Reference database in FASTA format.
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output:
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2022-10-05 10:24:18 +00:00
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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2022-12-23 16:23:05 +00:00
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- index:
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2022-05-03 07:28:46 +00:00
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type: file
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description: Minimap2 fasta index.
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pattern: "*.mmi"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@yuukiiwa"
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- "@drpatelh"
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