mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-11 03:53:09 +00:00
29 lines
1,006 B
YAML
29 lines
1,006 B
YAML
|
name: nf-core AWS test
|
||
|
|
# This workflow can be triggered manually with the GitHub actions workflow dispatch button.
|
||
|
|
# It runs the -profile 'test' on AWS batch
|
||
|
|
|
||
|
|
on:
|
||
|
|
workflow_dispatch:
|
||
|
|
jobs:
|
||
|
|
run-tower:
|
||
|
|
name: Run AWS tests
|
||
|
|
if: github.repository == 'nf-core/taxprofiler'
|
||
|
|
runs-on: ubuntu-latest
|
||
|
|
steps:
|
||
|
|
- name: Launch workflow via tower
|
||
|
|
uses: nf-core/tower-action@v2
|
||
|
|
|
||
|
|
with:
|
||
|
|
workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
|
||
|
|
access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
|
||
|
|
compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
|
||
|
|
pipeline: ${{ github.repository }}
|
||
|
|
revision: ${{ github.sha }}
|
||
|
|
workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/taxprofiler/work-${{ github.sha }}
|
||
|
|
parameters: |
|
||
|
|
{
|
||
|
|
"outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/taxprofiler/results-test-${{ github.sha }}"
|
||
|
|
}
|
||
|
|
profiles: test,aws_tower
|
||
|
|
pre_run_script: 'export NXF_VER=21.10.3'
|