mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-24 11:59:56 +00:00
51 lines
1.3 KiB
YAML
51 lines
1.3 KiB
YAML
|
name: "kaiju_kaiju2table"
|
||
|
|
description: write your description here
|
||
|
|
keywords:
|
||
|
|
- classify
|
||
|
|
- metagenomics
|
||
|
|
tools:
|
||
|
|
- kaiju:
|
||
|
|
description: Fast and sensitive taxonomic classification for metagenomics
|
||
|
|
homepage: https://kaiju.binf.ku.dk/
|
||
|
|
documentation: https://github.com/bioinformatics-centre/kaiju/blob/master/README.md
|
||
|
|
tool_dev_url: https://github.com/bioinformatics-centre/kaiju
|
||
|
|
doi: "10.1038/ncomms11257"
|
||
|
|
licence: ["GNU GPL v3"]
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- results:
|
||
|
|
type: file
|
||
|
|
description: File containing the kaiju classification results
|
||
|
|
pattern: "*.{txt}"
|
||
|
|
- taxon_rank:
|
||
|
|
type: string
|
||
|
|
description: |
|
||
|
|
Taxonomic rank to display in report
|
||
|
|
pattern: "phylum|class|order|family|genus|species"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- results:
|
||
|
|
type: file
|
||
|
|
description: |
|
||
|
|
Summary table for a given taxonomic rank
|
||
|
|
pattern: "*.{tsv}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@sofstam"
|
||
|
|
- "@talnor"
|
||
|
|
- "@jfy133"
|