mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-24 08:59:54 +00:00
52 lines
1.5 KiB
YAML
52 lines
1.5 KiB
YAML
|
name: "megan_rma2info"
|
||
|
|
description: Analyses an RMA file and exports information in text format
|
||
|
|
keywords:
|
||
|
|
- megan
|
||
|
|
- rma6
|
||
|
|
- classification
|
||
|
|
- conversion
|
||
|
|
tools:
|
||
|
|
- "megan":
|
||
|
|
description: "A tool for studying the taxonomic content of a set of DNA reads"
|
||
|
|
homepage: "https://uni-tuebingen.de/fakultaeten/mathematisch-naturwissenschaftliche-fakultaet/fachbereiche/informatik/lehrstuehle/algorithms-in-bioinformatics/software/megan6/"
|
||
|
|
documentation: "https://software-ab.informatik.uni-tuebingen.de/download/megan6/welcome.html"
|
||
|
|
tool_dev_url: "https://github.com/husonlab/megan-ce"
|
||
|
|
doi: "10.1371/journal.pcbi.1004957"
|
||
|
|
licence: "['GPL >=3']"
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- rma6:
|
||
|
|
type: file
|
||
|
|
description: RMA6 file from MEGAN or MALT
|
||
|
|
pattern: "*.rma6"
|
||
|
|
- megan_summary:
|
||
|
|
type: boolean
|
||
|
|
description: Specify whether to generate an MEGAN summary file
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- txt:
|
||
|
|
type: file
|
||
|
|
description: Compressed text file
|
||
|
|
pattern: "*.txt.gz"
|
||
|
|
- megan_summary:
|
||
|
|
type: file
|
||
|
|
description: Optionally generated MEGAN summary file
|
||
|
|
pattern: "*.megan"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@jfy133"
|