2022-02-18 06:55:14 +00:00
|
|
|
<html>
|
2022-05-16 10:22:38 +00:00
|
|
|
<head>
|
|
|
|
|
<meta charset="utf-8">
|
|
|
|
|
<meta http-equiv="X-UA-Compatible" content="IE=edge">
|
|
|
|
|
<meta name="viewport" content="width=device-width, initial-scale=1">
|
2022-02-18 06:55:14 +00:00
|
|
|
|
2023-05-02 11:20:06 +00:00
|
|
|
<meta name="description" content="nf-core/taxprofiler: Taxonomic classification and profiling of shotgun and long-read metagenomic data">
|
2022-05-16 10:22:38 +00:00
|
|
|
<title>nf-core/taxprofiler Pipeline Report</title>
|
|
|
|
|
</head>
|
|
|
|
|
<body>
|
|
|
|
|
<div style="font-family: Helvetica, Arial, sans-serif; padding: 30px; max-width: 800px; margin: 0 auto;">
|
2022-02-18 06:55:14 +00:00
|
|
|
|
2022-05-16 10:22:38 +00:00
|
|
|
<img src="cid:nfcorepipelinelogo">
|
2022-02-18 06:55:14 +00:00
|
|
|
|
2022-05-16 10:22:38 +00:00
|
|
|
<h1>nf-core/taxprofiler v${version}</h1>
|
|
|
|
|
<h2>Run Name: $runName</h2>
|
|
|
|
|
|
|
|
|
|
<% if (!success){
|
|
|
|
|
out << """
|
|
|
|
|
<div style="color: #a94442; background-color: #f2dede; border-color: #ebccd1; padding: 15px; margin-bottom: 20px; border: 1px solid transparent; border-radius: 4px;">
|
|
|
|
|
<h4 style="margin-top:0; color: inherit;">nf-core/taxprofiler execution completed unsuccessfully!</h4>
|
2022-02-18 06:55:14 +00:00
|
|
|
<p>The exit status of the task that caused the workflow execution to fail was: <code>$exitStatus</code>.</p>
|
|
|
|
|
<p>The full error message was:</p>
|
2022-05-16 10:22:38 +00:00
|
|
|
<pre style="white-space: pre-wrap; overflow: visible; margin-bottom: 0;">${errorReport}</pre>
|
|
|
|
|
</div>
|
|
|
|
|
"""
|
|
|
|
|
} else {
|
|
|
|
|
out << """
|
|
|
|
|
<div style="color: #3c763d; background-color: #dff0d8; border-color: #d6e9c6; padding: 15px; margin-bottom: 20px; border: 1px solid transparent; border-radius: 4px;">
|
2022-02-18 06:55:14 +00:00
|
|
|
nf-core/taxprofiler execution completed successfully!
|
2022-05-16 10:22:38 +00:00
|
|
|
</div>
|
|
|
|
|
"""
|
|
|
|
|
}
|
|
|
|
|
%>
|
2022-02-18 06:55:14 +00:00
|
|
|
|
2022-05-16 10:22:38 +00:00
|
|
|
<p>The workflow was completed at <strong>$dateComplete</strong> (duration: <strong>$duration</strong>)</p>
|
|
|
|
|
<p>The command used to launch the workflow was as follows:</p>
|
|
|
|
|
<pre style="white-space: pre-wrap; overflow: visible; background-color: #ededed; padding: 15px; border-radius: 4px; margin-bottom:30px;">$commandLine</pre>
|
2022-02-18 06:55:14 +00:00
|
|
|
|
2022-05-16 10:22:38 +00:00
|
|
|
<h3>Pipeline Configuration:</h3>
|
|
|
|
|
<table style="width:100%; max-width:100%; border-spacing: 0; border-collapse: collapse; border:0; margin-bottom: 30px;">
|
|
|
|
|
<tbody style="border-bottom: 1px solid #ddd;">
|
|
|
|
|
<% out << summary.collect{ k,v -> "<tr><th style='text-align:left; padding: 8px 0; line-height: 1.42857143; vertical-align: top; border-top: 1px solid #ddd;'>$k</th><td style='text-align:left; padding: 8px; line-height: 1.42857143; vertical-align: top; border-top: 1px solid #ddd;'><pre style='white-space: pre-wrap; overflow: visible;'>$v</pre></td></tr>" }.join("\n") %>
|
|
|
|
|
</tbody>
|
|
|
|
|
</table>
|
2022-02-18 06:55:14 +00:00
|
|
|
|
2022-05-16 10:22:38 +00:00
|
|
|
<p>nf-core/taxprofiler</p>
|
|
|
|
|
<p><a href="https://github.com/nf-core/taxprofiler">https://github.com/nf-core/taxprofiler</a></p>
|
|
|
|
|
|
|
|
|
|
</div>
|
|
|
|
|
|
|
|
|
|
</body>
|
2022-02-18 06:55:14 +00:00
|
|
|
</html>
|
