2022-03-23 13:57:56 +00:00
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report_comment: >
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This report has been generated by the <a href="https://github.com/nf-core/taxprofiler" target="_blank">nf-core/taxprofiler</a>
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analysis pipeline. For information about how to interpret these results, please see the
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<a href="https://nf-co.re/taxprofiler" target="_blank">documentation</a>.
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report_section_order:
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software_versions:
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order: -1000
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"nf-core-taxprofiler-summary":
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order: -1001
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export_plots: true
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2022-05-31 10:45:38 +00:00
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custom_logo: "nf-core-taxprofiler_logo_custom_light.png"
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custom_logo_url: https://nf-co.re/taxprofiler
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custom_logo_title: "nf-core/taxprofiler"
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2022-07-26 08:18:54 +00:00
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run_modules:
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- fastqc
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- adapterRemoval
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- fastp
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- bowtie2
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- kraken
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- malt
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#extra_fn_clean_exts:
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# - '_fastp'
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# - '.pe.settings'
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# - '.se.settings'
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top_modules:
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- 'fastqc':
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name: "FastQC (pre-processing)"
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path_filters:
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- '*_raw.zip'
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- 'fastp'
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- 'fastqc':
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name: "FastQC (post-processing)"
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path_filters:
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- '*_processed.zip'
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- 'kraken':
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name: "Kraken"
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path_filters:
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- '*kraken.report'
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- 'kraken':
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name: Centrifuge"
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path_filters:
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- '*centrifuge.kreport'
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