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53 lines
1.3 KiB
YAML
53 lines
1.3 KiB
YAML
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name: falco
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description: Run falco on sequenced reads
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keywords:
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- quality control
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- qc
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- adapters
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- fastq
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tools:
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- fastqc:
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description: "falco is a drop-in C++ implementation of FastQC to assess the quality of sequence reads."
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homepage: "https://falco.readthedocs.io/"
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documentation: "https://falco.readthedocs.io/"
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tool_dev_url: "None"
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doi: ""
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licence: "['GPL v3']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: |
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List of input FastQ files of size 1 and 2 for single-end and paired-end data,
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respectively.
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- html:
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type: file
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description: FastQC like report
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pattern: "*_{fastqc_report.html}"
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- txt:
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type: file
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description: falco report data
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pattern: "*_{data.txt}"
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- txt:
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type: file
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description: falco summary file
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pattern: "*_{summary.txt}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@lucacozzuto"
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