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44 lines
1.2 KiB
YAML
44 lines
1.2 KiB
YAML
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name: krakentools_combinekreports
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description: Takes a Kraken report file and prints out a krona-compatible TEXT file
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keywords:
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- kraken
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- krakentools
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- metagenomics
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- table
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- combining
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- merging
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tools:
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- krakentools:
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description: KrakenTools is a suite of scripts to be used for post-analysis of Kraken/KrakenUniq/Kraken2/Bracken results. Please cite the relevant paper if using KrakenTools with any of the listed programs.
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homepage: https://github.com/jenniferlu717/KrakenTools
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licence: ["GPL v3"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- kreports:
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type: file
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description: List of kraken-style report files
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pattern: "*.{txt,kreport}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- txt:
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type: file
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description: Combined kreport file of all input files
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pattern: "*.txt"
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authors:
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- "@jfy133"
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