mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-24 03:29:56 +00:00
54 lines
1.4 KiB
YAML
54 lines
1.4 KiB
YAML
|
name: samtools_index
|
||
|
|
description: Index SAM/BAM/CRAM file
|
||
|
|
keywords:
|
||
|
|
- index
|
||
|
|
- bam
|
||
|
|
- sam
|
||
|
|
- cram
|
||
|
|
tools:
|
||
|
|
- samtools:
|
||
|
|
description: |
|
||
|
|
SAMtools is a set of utilities for interacting with and post-processing
|
||
|
|
short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li.
|
||
|
|
These files are generated as output by short read aligners like BWA.
|
||
|
|
homepage: http://www.htslib.org/
|
||
|
|
documentation: hhttp://www.htslib.org/doc/samtools.html
|
||
|
|
doi: 10.1093/bioinformatics/btp352
|
||
|
|
licence: ["MIT"]
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- bam:
|
||
|
|
type: file
|
||
|
|
description: BAM/CRAM/SAM file
|
||
|
|
pattern: "*.{bam,cram,sam}"
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- bai:
|
||
|
|
type: file
|
||
|
|
description: BAM/CRAM/SAM index file
|
||
|
|
pattern: "*.{bai,crai,sai}"
|
||
|
|
- crai:
|
||
|
|
type: file
|
||
|
|
description: BAM/CRAM/SAM index file
|
||
|
|
pattern: "*.{bai,crai,sai}"
|
||
|
|
- csi:
|
||
|
|
type: file
|
||
|
|
description: CSI index file
|
||
|
|
pattern: "*.{csi}"
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
authors:
|
||
|
|
- "@drpatelh"
|
||
|
|
- "@ewels"
|
||
|
|
- "@maxulysse"
|