mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-15 04:33:09 +00:00
17 lines
595 B
Diff
17 lines
595 B
Diff
|
Changes in module 'nf-core/falco'
|
||
|
|
--- modules/nf-core/falco/main.nf
|
||
|
|
+++ modules/nf-core/falco/main.nf
|
||
|
|
@@ -33,7 +33,9 @@
|
||
|
|
"""
|
||
|
|
} else {
|
||
|
|
"""
|
||
|
|
- falco $args --threads $task.cpus ${reads}
|
||
|
|
+ [ ! -f ${prefix}_1.fastq.gz ] && ln -s ${reads[0]} ${prefix}_1.fastq.gz
|
||
|
|
+ [ ! -f ${prefix}_2.fastq.gz ] && ln -s ${reads[1]} ${prefix}_2.fastq.gz
|
||
|
|
+ falco $args --threads $task.cpus ${prefix}_1.fastq.gz ${prefix}_2.fastq.gz
|
||
|
|
|
||
|
|
cat <<-END_VERSIONS > versions.yml
|
||
|
|
"${task.process}":
|
||
|
|
|
||
|
|
************************************************************
|