mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-27 03:09:54 +00:00
44 lines
1.2 KiB
YAML
44 lines
1.2 KiB
YAML
|
name: krakentools_combinekreports
|
||
|
|
description: Takes a Kraken report file and prints out a krona-compatible TEXT file
|
||
|
|
keywords:
|
||
|
|
- kraken
|
||
|
|
- krakentools
|
||
|
|
- metagenomics
|
||
|
|
- table
|
||
|
|
- combining
|
||
|
|
- merging
|
||
|
|
tools:
|
||
|
|
- krakentools:
|
||
|
|
description: KrakenTools is a suite of scripts to be used for post-analysis of Kraken/KrakenUniq/Kraken2/Bracken results. Please cite the relevant paper if using KrakenTools with any of the listed programs.
|
||
|
|
homepage: https://github.com/jenniferlu717/KrakenTools
|
||
|
|
licence: ["GPL v3"]
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- kreports:
|
||
|
|
type: file
|
||
|
|
description: List of kraken-style report files
|
||
|
|
pattern: "*.{txt,kreport}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- txt:
|
||
|
|
type: file
|
||
|
|
description: Combined kreport file of all input files
|
||
|
|
pattern: "*.txt"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@jfy133"
|