mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-25 16:19:54 +00:00
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
|
name: krakentools_kreport2krona
|
||
|
|
description: Takes a Kraken report file and prints out a krona-compatible TEXT file
|
||
|
|
keywords:
|
||
|
|
- kraken
|
||
|
|
- krona
|
||
|
|
- metagenomics
|
||
|
|
- visualization
|
||
|
|
tools:
|
||
|
|
- krakentools:
|
||
|
|
description: KrakenTools is a suite of scripts to be used for post-analysis of Kraken/KrakenUniq/Kraken2/Bracken results. Please cite the relevant paper if using KrakenTools with any of the listed programs.
|
||
|
|
homepage: https://github.com/jenniferlu717/KrakenTools
|
||
|
|
licence: ["GPL v3"]
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- kreport:
|
||
|
|
type: file
|
||
|
|
description: Kraken report
|
||
|
|
pattern: "*.{txt,kreport}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- krona:
|
||
|
|
type: file
|
||
|
|
description: Krona text-based input file converted from Kraken report
|
||
|
|
pattern: "*.{txt,krona}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@MillironX"
|