mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-27 03:49:54 +00:00
53 lines
1.3 KiB
YAML
53 lines
1.3 KiB
YAML
|
name: falco
|
||
|
|
description: Run falco on sequenced reads
|
||
|
|
keywords:
|
||
|
|
- quality control
|
||
|
|
- qc
|
||
|
|
- adapters
|
||
|
|
- fastq
|
||
|
|
tools:
|
||
|
|
- fastqc:
|
||
|
|
description: "falco is a drop-in C++ implementation of FastQC to assess the quality of sequence reads."
|
||
|
|
|
||
|
|
homepage: "https://falco.readthedocs.io/"
|
||
|
|
documentation: "https://falco.readthedocs.io/"
|
||
|
|
tool_dev_url: "None"
|
||
|
|
doi: ""
|
||
|
|
licence: "['GPL v3']"
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- reads:
|
||
|
|
type: file
|
||
|
|
description: |
|
||
|
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
|
||
|
|
respectively.
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- html:
|
||
|
|
type: file
|
||
|
|
description: FastQC like report
|
||
|
|
pattern: "*_{fastqc_report.html}"
|
||
|
|
- txt:
|
||
|
|
type: file
|
||
|
|
description: falco report data
|
||
|
|
pattern: "*_{data.txt}"
|
||
|
|
- txt:
|
||
|
|
type: file
|
||
|
|
description: falco summary file
|
||
|
|
pattern: "*_{summary.txt}"
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
authors:
|
||
|
|
- "@lucacozzuto"
|