mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-29 23:59:54 +00:00
48 lines
1.7 KiB
YAML
48 lines
1.7 KiB
YAML
|
name: "krona_ktimporttext"
|
||
|
|
description: Creates a Krona chart from text files listing quantities and lineages.
|
||
|
|
keywords:
|
||
|
|
- plot
|
||
|
|
- taxonomy
|
||
|
|
- interactive
|
||
|
|
- html
|
||
|
|
- visualisation
|
||
|
|
- krona chart
|
||
|
|
- metagenomics
|
||
|
|
tools:
|
||
|
|
- krona:
|
||
|
|
description: Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.
|
||
|
|
homepage: https://github.com/marbl/Krona/wiki/KronaTools
|
||
|
|
documentation: http://manpages.ubuntu.com/manpages/impish/man1/ktImportTaxonomy.1.html
|
||
|
|
tool_dev_url: https://github.com/marbl/Krona
|
||
|
|
doi: 10.1186/1471-2105-12-385
|
||
|
|
licence: https://raw.githubusercontent.com/marbl/Krona/master/KronaTools/LICENSE.txt
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test']
|
||
|
|
- report:
|
||
|
|
type: file
|
||
|
|
description: "Tab-delimited text file. Each line should be a number followed by a list of wedges to contribute to (starting from the highest level). If no wedges are listed (and just a quantity is given), it will contribute to the top level. If the same lineage is listed more than once, the values will be added. Quantities can be omitted if -q is specified. Lines beginning with '#' will be ignored."
|
||
|
|
pattern: "*.{txt}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test' ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- html:
|
||
|
|
type: file
|
||
|
|
description: A html file containing an interactive krona plot.
|
||
|
|
pattern: "*.{html}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@jianhong"
|