mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-15 09:53:09 +00:00
40 lines
1,009 B
YAML
40 lines
1,009 B
YAML
|
name: cat_fastq
|
||
|
|
description: Concatenates fastq files
|
||
|
|
keywords:
|
||
|
|
- fastq
|
||
|
|
- concatenate
|
||
|
|
tools:
|
||
|
|
- cat:
|
||
|
|
description: |
|
||
|
|
The cat utility reads files sequentially, writing them to the standard output.
|
||
|
|
documentation: https://www.gnu.org/software/coreutils/manual/html_node/cat-invocation.html
|
||
|
|
licence: ["GPL-3.0-or-later"]
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- reads:
|
||
|
|
type: list
|
||
|
|
description: |
|
||
|
|
List of input FastQ files to be concatenated.
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- reads:
|
||
|
|
type: file
|
||
|
|
description: Merged fastq file
|
||
|
|
pattern: "*.{merged.fastq.gz}"
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@joseespinosa"
|
||
|
|
- "@drpatelh"
|