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https://github.com/MillironX/taxprofiler.git
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17 lines
595 B
Diff
17 lines
595 B
Diff
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Changes in module 'nf-core/falco'
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--- modules/nf-core/falco/main.nf
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+++ modules/nf-core/falco/main.nf
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@@ -33,7 +33,9 @@
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"""
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} else {
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"""
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- falco $args --threads $task.cpus ${reads}
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+ [ ! -f ${prefix}_1.fastq.gz ] && ln -s ${reads[0]} ${prefix}_1.fastq.gz
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+ [ ! -f ${prefix}_2.fastq.gz ] && ln -s ${reads[1]} ${prefix}_2.fastq.gz
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+ falco $args --threads $task.cpus ${prefix}_1.fastq.gz ${prefix}_2.fastq.gz
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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************************************************************
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