From 000f129dab1b139cec6e9194670addf8d9e6173a Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Fri, 25 Mar 2022 15:32:56 +0100 Subject: [PATCH] Apply suggestions from code review --- subworkflows/local/shortread_preprocessing.nf | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/subworkflows/local/shortread_preprocessing.nf b/subworkflows/local/shortread_preprocessing.nf index c31289d..c82536f 100644 --- a/subworkflows/local/shortread_preprocessing.nf +++ b/subworkflows/local/shortread_preprocessing.nf @@ -29,12 +29,11 @@ workflow SHORTREAD_PREPROCESSING { ch_processed_reads = reads } - //FASTQC_PROCESSED ( ch_processed_reads ) - //ch_versions = ch_versions.mix( FASTQC_PROCESSED.out.versions ) - //ch_multiqc_files = ch_multiqc_files.mix( FASTQC_PROCESSED.out.zip.collect{it[1]} ) + FASTQC_PROCESSED ( ch_processed_reads ) + ch_versions = ch_versions.mix( FASTQC_PROCESSED.out.versions ) + ch_multiqc_files = ch_multiqc_files.mix( FASTQC_PROCESSED.out.zip.collect{it[1]} ) emit: - // TODO: problem, this is being exported as a multi-channel output? This is why FASTQC is broken reads = ch_processed_reads // channel: [ val(meta), [ reads ] ] versions = ch_versions // channel: [ versions.yml ] mqc = ch_multiqc_files