diff --git a/nextflow.config b/nextflow.config index 29c87cd..88b8d43 100644 --- a/nextflow.config +++ b/nextflow.config @@ -128,6 +128,7 @@ params { // krona run_krona = false + krona_taxonomy_directory = null } // Load base.config by default for all pipelines diff --git a/subworkflows/local/visualization_krona.nf b/subworkflows/local/visualization_krona.nf index b9f645d..d945184 100644 --- a/subworkflows/local/visualization_krona.nf +++ b/subworkflows/local/visualization_krona.nf @@ -51,6 +51,10 @@ workflow VISUALIZATION_KRONA { ch_krona_html = ch_krona_html.mix( KRONA_KTIMPORTTEXT.out.html ) ch_versions = ch_versions.mix( KRONA_KTIMPORTTEXT.out.versions.first() ) + /* + Convert Krona + */ + emit: html = ch_krona_html versions = ch_versions