From 0050f453456cdf7007881b2a7e4244c03a6a6c2c Mon Sep 17 00:00:00 2001
From: James Fellows Yates <jfy133@gmail.com>
Date: Thu, 30 Jun 2022 11:43:52 +0200
Subject: [PATCH] Add taxonomy directory param

---
 nextflow.config                           | 1 +
 subworkflows/local/visualization_krona.nf | 4 ++++
 2 files changed, 5 insertions(+)

diff --git a/nextflow.config b/nextflow.config
index 29c87cd..88b8d43 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -128,6 +128,7 @@ params {
 
     // krona
     run_krona                  = false
+    krona_taxonomy_directory   = null
 }
 
 // Load base.config by default for all pipelines
diff --git a/subworkflows/local/visualization_krona.nf b/subworkflows/local/visualization_krona.nf
index b9f645d..d945184 100644
--- a/subworkflows/local/visualization_krona.nf
+++ b/subworkflows/local/visualization_krona.nf
@@ -51,6 +51,10 @@ workflow VISUALIZATION_KRONA {
     ch_krona_html = ch_krona_html.mix( KRONA_KTIMPORTTEXT.out.html )
     ch_versions = ch_versions.mix( KRONA_KTIMPORTTEXT.out.versions.first() )
 
+    /*
+        Convert Krona
+    */
+
     emit:
     html = ch_krona_html
     versions = ch_versions