From 0072c29a6f963be7396a9b5fee7edec67bfb83f0 Mon Sep 17 00:00:00 2001 From: Sofia Stamouli <91951607+sofstam@users.noreply.github.com> Date: Tue, 13 Sep 2022 18:12:14 +0200 Subject: [PATCH] Update docs/usage.md Co-authored-by: James A. Fellows Yates --- docs/usage.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/usage.md b/docs/usage.md index 3ab6237..ead0ea2 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -413,6 +413,6 @@ NXF_OPTS='-Xms1g -Xmx4g' ## Troubleshooting and FAQs -### I get a warning during centrifuge_kreport process when running taxprofiler on a minimal dataset. +### I get a warning during centrifuge_kreport process with exit status 255. When a sample has no hits, `centrifuge` classifier exits with exit code `255`. The pipeline does not fail and this is provided as a `WARN`.