diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index 2e38968..71b56fd 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -56,7 +56,8 @@ top_modules: - "*_raw_falco_*_report.html" - "fastp" - "adapterRemoval" - - "porechop" + - "porechop": + extra: "ℹ️: if you get the error message 'Error - was not able to plot data.' this means that porechop did not detect any adapters and therefore no statistics generated." - "fastqc": name: "FastQC (post-Trimming)" path_filters: @@ -82,7 +83,7 @@ top_modules: target: "Bracken" doi: "10.7717/peerj-cs.104" info: "Estimates species abundances in metagenomics samples by probabilistically re-distributing reads in the taxonomic tree." - extra: "Note: plot title will say Kraken2 due to the first step of bracken producing the same output format as Kraken. Abundance information is currently not supported in MultiQC." + extra: "ℹ️: plot title will say Kraken2 due to the first step of bracken producing the same output format as Kraken. Abundance information is currently not supported in MultiQC." path_filters: - "*.bracken.kraken2.report.txt" - "kraken": @@ -91,7 +92,7 @@ top_modules: target: "Centrifuge" doi: "10.1101/gr.210641.116" info: "is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index. Note: Figure title" - extra: "Note: plot title will say Kraken2 due to Centrifuge producing the same output format as Kraken. If activated, see the actual Kraken2 results in the section above." + extra: "ℹ️: plot title will say Kraken2 due to Centrifuge producing the same output format as Kraken. If activated, see the actual Kraken2 results in the section above." path_filters: - "*.centrifuge.txt" - "malt":