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Code Issues Releases Packages Activity

A bit of clean up

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This commit is contained in:
James Fellows Yates 2022-04-10 07:26:20 +02:00
parent 80c08af11b
commit 030099c559
3 changed files with 3 additions and 2 deletions
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1
subworkflows/local/profiling.nf
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@ -70,7 +70,6 @@ workflow PROFILING {
} }
ch_input_for_centrifuge = ch_input_for_profiling.centrifuge ch_input_for_centrifuge = ch_input_for_profiling.centrifuge
.dump(tag: "input for centrifuge")
.multiMap { .multiMap {
it -> it ->
reads: [ it[0] + it[2], it[1] ] reads: [ it[0] + it[2], it[1] ]

2
workflows/taxprofiler.nf
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@ -85,6 +85,7 @@ workflow TAXPROFILER {
DB_CHECK ( DB_CHECK (
ch_databases ch_databases
) )
ch_versions = ch_versions.mix(DB_CHECK.out.versions)
/* /*
MODULE: Run FastQC MODULE: Run FastQC
@ -101,6 +102,7 @@ workflow TAXPROFILER {
SUBWORKFLOW: PERFORM PREPROCESSING SUBWORKFLOW: PERFORM PREPROCESSING
*/ */
if ( params.shortread_clipmerge ) { if ( params.shortread_clipmerge ) {
ch_shortreads_preprocessed = SHORTREAD_PREPROCESSING ( INPUT_CHECK.out.fastq ).reads ch_shortreads_preprocessed = SHORTREAD_PREPROCESSING ( INPUT_CHECK.out.fastq ).reads
} else { } else {
ch_shortreads_preprocessed = INPUT_CHECK.out.fastq ch_shortreads_preprocessed = INPUT_CHECK.out.fastq