mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-10 23:13:09 +00:00
A bit of clean up
This commit is contained in:
parent
80c08af11b
commit
030099c559
3 changed files with 3 additions and 2 deletions
|
@ -70,7 +70,6 @@ workflow PROFILING {
|
|||
}
|
||||
|
||||
ch_input_for_centrifuge = ch_input_for_profiling.centrifuge
|
||||
.dump(tag: "input for centrifuge")
|
||||
.multiMap {
|
||||
it ->
|
||||
reads: [ it[0] + it[2], it[1] ]
|
||||
|
|
|
@ -10,7 +10,7 @@ workflow SHORTREAD_FASTP {
|
|||
reads // [[meta], [reads]]
|
||||
|
||||
main:
|
||||
ch_versions = Channel.empty()
|
||||
ch_versions = Channel.empty()
|
||||
ch_multiqc_files = Channel.empty()
|
||||
|
||||
ch_input_for_fastp = reads
|
||||
|
|
|
@ -85,6 +85,7 @@ workflow TAXPROFILER {
|
|||
DB_CHECK (
|
||||
ch_databases
|
||||
)
|
||||
ch_versions = ch_versions.mix(DB_CHECK.out.versions)
|
||||
|
||||
/*
|
||||
MODULE: Run FastQC
|
||||
|
@ -101,6 +102,7 @@ workflow TAXPROFILER {
|
|||
SUBWORKFLOW: PERFORM PREPROCESSING
|
||||
*/
|
||||
if ( params.shortread_clipmerge ) {
|
||||
|
||||
ch_shortreads_preprocessed = SHORTREAD_PREPROCESSING ( INPUT_CHECK.out.fastq ).reads
|
||||
} else {
|
||||
ch_shortreads_preprocessed = INPUT_CHECK.out.fastq
|
||||
|
|
Loading…
Reference in a new issue