mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-22 07:09:56 +00:00
Update the dev branch with the DIAMOND module update
This commit is contained in:
parent
d7ca3df160
commit
035b4b7a17
3 changed files with 11 additions and 2 deletions
|
@ -28,7 +28,7 @@
|
|||
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
|
||||
},
|
||||
"diamond/blastx": {
|
||||
"git_sha": "bd3bfe0817246082525ab93707976676b1fe208b"
|
||||
"git_sha": "3531824af826c16cd252bc5aa82ae169b244ebaa"
|
||||
},
|
||||
"fastp": {
|
||||
"git_sha": "d0a1cbb703a130c19f6796c3fce24fbe7dfce789"
|
||||
|
|
6
modules/nf-core/modules/diamond/blastx/main.nf
generated
6
modules/nf-core/modules/diamond/blastx/main.nf
generated
|
@ -21,6 +21,7 @@ process DIAMOND_BLASTX {
|
|||
tuple val(meta), path('*.sam') , optional: true, emit: sam
|
||||
tuple val(meta), path('*.tsv') , optional: true, emit: tsv
|
||||
tuple val(meta), path('*.paf') , optional: true, emit: paf
|
||||
tuple val(meta), path("*.log") , emit: log
|
||||
path "versions.yml" , emit: versions
|
||||
|
||||
when:
|
||||
|
@ -54,7 +55,10 @@ process DIAMOND_BLASTX {
|
|||
--query $fasta \\
|
||||
--outfmt ${outfmt} ${columns} \\
|
||||
$args \\
|
||||
--out ${prefix}.${out_ext}
|
||||
--out ${prefix}.${out_ext} \\
|
||||
--log
|
||||
|
||||
mv diamond.log ${prefix}.log
|
||||
|
||||
cat <<-END_VERSIONS > versions.yml
|
||||
"${task.process}":
|
||||
|
|
5
modules/nf-core/modules/diamond/blastx/meta.yml
generated
5
modules/nf-core/modules/diamond/blastx/meta.yml
generated
|
@ -70,7 +70,12 @@ output:
|
|||
type: file
|
||||
description: File containing software versions
|
||||
pattern: "versions.yml"
|
||||
- log:
|
||||
type: file
|
||||
description: Log file containing stdout information
|
||||
pattern: "*.{log}"
|
||||
|
||||
authors:
|
||||
- "@spficklin"
|
||||
- "@jfy133"
|
||||
- "@mjamy"
|
||||
|
|
Loading…
Reference in a new issue