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Use new resources for test data

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This commit is contained in:
James Fellows Yates 2022-03-28 20:38:16 +02:00
parent 94e5cfef4a
commit 04fb6f4127
1 changed files with 1 additions and 14 deletions
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15
conf/test.config
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@ -15,7 +15,7 @@ params {
config_profile_description = 'Minimal test dataset to check pipeline function' config_profile_description = 'Minimal test dataset to check pipeline function'
// Limit resources so that this can run on GitHub Actions // Limit resources so that this can run on GitHub Actions
max_cpus = 8 max_cpus = 2
max_memory = '6.GB' max_memory = '6.GB'
max_time = '6.h' max_time = '6.h'
@ -29,16 +29,3 @@ params {
shortread_clipmerge = true shortread_clipmerge = true
} }
process {
withName: FASTQC {
cpus = { check_max( 8 * task.attempt, 'cpus' ) }
memory = { check_max( 6.GB * task.attempt, 'memory' ) }
time = { check_max( 6.h * task.attempt, 'time' ) }
}
withName: FASTQC_PROCESSED {
cpus = { check_max( 8 * task.attempt, 'cpus' ) }
memory = { check_max( 6.GB * task.attempt, 'memory' ) }
time = { check_max( 6.h * task.attempt, 'time' ) }
}
}