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Use new resources for test data
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1 changed files with 1 additions and 14 deletions
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@ -15,7 +15,7 @@ params {
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config_profile_description = 'Minimal test dataset to check pipeline function'
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config_profile_description = 'Minimal test dataset to check pipeline function'
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// Limit resources so that this can run on GitHub Actions
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// Limit resources so that this can run on GitHub Actions
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max_cpus = 8
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max_cpus = 2
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max_memory = '6.GB'
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max_memory = '6.GB'
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max_time = '6.h'
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max_time = '6.h'
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@ -29,16 +29,3 @@ params {
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shortread_clipmerge = true
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shortread_clipmerge = true
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}
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}
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process {
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withName: FASTQC {
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cpus = { check_max( 8 * task.attempt, 'cpus' ) }
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memory = { check_max( 6.GB * task.attempt, 'memory' ) }
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time = { check_max( 6.h * task.attempt, 'time' ) }
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}
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withName: FASTQC_PROCESSED {
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cpus = { check_max( 8 * task.attempt, 'cpus' ) }
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memory = { check_max( 6.GB * task.attempt, 'memory' ) }
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time = { check_max( 6.h * task.attempt, 'time' ) }
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}
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}
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