From 0630fce3b5ddb4db1b1932b2405e11ba9bd321e2 Mon Sep 17 00:00:00 2001
From: James Fellows Yates <jfy133@gmail.com>
Date: Sat, 30 Apr 2022 08:11:40 +0200
Subject: [PATCH] Tweak based on official DIAMOND test-data

---
 conf/test.config | 4 ----
 nextflow.config  | 2 +-
 2 files changed, 1 insertion(+), 5 deletions(-)

diff --git a/conf/test.config b/conf/test.config
index 35d3539..a2464b2 100644
--- a/conf/test.config
+++ b/conf/test.config
@@ -35,10 +35,6 @@ params {
     run_metaphlan3                        = true
     run_centrifuge                        = true
     run_diamond                           = true
-    // TODO: setting to txt here as does not require taxonomy in database.
-    // Should consider re-building our test database but with the required
-    // taxonomy files, but this may make large files (prot2access: 9GB)
-    diamond_output_format                 = 'txt'
 }
 
 process {
diff --git a/nextflow.config b/nextflow.config
index 963a4a5..5644786 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -111,7 +111,7 @@ params {
 
     // diamond
     run_diamond                = false
-    diamond_output_format      = 'tsv'
+    diamond_output_format      = 'txt'
 }
 
 // Load base.config by default for all pipelines