diff --git a/conf/modules.config b/conf/modules.config index f9d0329..6563cc9 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -351,6 +351,10 @@ process { ] } + withName: KAIJU_KAIJU2KRONA { + ext.args = '-v -u' + } + withName: DIAMOND_BLASTX { ext.args = { "${meta.db_params}" } ext.prefix = params.perform_runmerging ? { "${meta.id}-${meta.db_name}" } : { "${meta.id}-${meta.run_accession}-${meta.db_name}" }