millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-09-21 04:32:06 +00:00
Code Issues Releases Packages Activity

Fix crash, add missing versions

Browse source
This commit is contained in:
James Fellows Yates 2022-04-23 08:36:01 +02:00
parent cda1274918
commit 06b38f3699
3 changed files with 4 additions and 5 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
subworkflows/local/db_check.nf
View file

@ -34,7 +34,7 @@ workflow DB_CHECK {
emit:
dbs = ch_final_dbs // channel: [ val(meta), [ db ] ]
versions = DATABASE_CHECK.out.versions // channel: [ versions.yml ]
versions = DATABASE_CHECK.out.versions.mix(UNTAR.out.versions.first()) // channel: [ versions.yml ]
}
def create_db_channels(LinkedHashMap row) {

2
subworkflows/local/profiling.nf
View file

@ -129,7 +129,7 @@ workflow PROFILING {
MEGAN_RMA2INFO (ch_maltrun_for_megan, params.malt_generatemegansummary )
ch_multiqc_files = ch_multiqc_files.mix( MALT_RUN.out.log.collect{it[1]}.ifEmpty([]) )
ch_versions = ch_versions.mix( MALT_RUN.out.versions.first() )
ch_versions = ch_versions.mix( MALT_RUN.out.versions.first(), MEGAN_RMA2INFO.out.versions.first() )
ch_raw_profiles = ch_raw_profiles.mix( MEGAN_RMA2INFO.out.txt )
}

5
workflows/taxprofiler.nf
View file

@ -196,10 +196,8 @@ workflow TAXPROFILER {
MODULE: MultiQC
*/
ch_versions = ch_versions.mix(MULTIQC.out.versions)
CUSTOM_DUMPSOFTWAREVERSIONS (
ch_versions.dump(tag: "software_versions_beforeuniqe").unique().dump(tag: "software_versions").collectFile(name: 'collated_versions.yml')
ch_versions.unique().collectFile(name: 'collated_versions.yml')
)
@ -236,6 +234,7 @@ workflow TAXPROFILER {
ch_multiqc_files.collect()
)
multiqc_report = MULTIQC.out.report.toList()
ch_versions = ch_versions.mix(MULTIQC.out.versions)
}
/*