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style: use map addition instead of cloning
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d17dce5590
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07db3c93e2
1 changed files with 4 additions and 14 deletions
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@ -20,33 +20,23 @@ workflow LONGREAD_PREPROCESSING {
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PORECHOP_PORECHOP ( reads )
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ch_processed_reads = PORECHOP_PORECHOP.out.reads
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.map {
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meta, reads ->
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def meta_new = meta.clone()
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meta_new['single_end'] = 1
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[ meta_new, reads ]
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}
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.map { meta, reads -> [ meta + [single_end: 1], reads ] }
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ch_versions = ch_versions.mix(PORECHOP_PORECHOP.out.versions.first())
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ch_multiqc_files = ch_multiqc_files.mix( PORECHOP_PORECHOP.out.log )
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} else if ( params.longread_qc_skipadaptertrim && !params.longread_qc_skipqualityfilter) {
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ch_processed_reads = FILTLONG ( reads.map{ meta, reads -> [meta, [], reads ]} )
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ch_processed_reads = FILTLONG ( reads.map { meta, reads -> [meta, [], reads ] } )
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ch_versions = ch_versions.mix(FILTLONG.out.versions.first())
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ch_multiqc_files = ch_multiqc_files.mix( FILTLONG.out.log )
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} else {
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PORECHOP_PORECHOP ( reads )
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ch_clipped_reads = PORECHOP_PORECHOP.out.reads
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.map {
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meta, reads ->
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def meta_new = meta.clone()
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meta_new['single_end'] = 1
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[ meta_new, reads ]
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}
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.map { meta, reads -> [ meta + [single_end: 1], reads ] }
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ch_processed_reads = FILTLONG ( ch_clipped_reads.map{ meta, reads -> [meta, [], reads ]} ).reads
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ch_processed_reads = FILTLONG ( ch_clipped_reads.map { meta, reads -> [meta, [], reads ] } ).reads
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ch_versions = ch_versions.mix(PORECHOP_PORECHOP.out.versions.first())
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ch_versions = ch_versions.mix(FILTLONG.out.versions.first())
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