From 082093f3dee43655b4911e5d81ba0eb0c693454c Mon Sep 17 00:00:00 2001
From: James Fellows Yates <jfy133@gmail.com>
Date: Sun, 10 Apr 2022 06:44:10 +0200
Subject: [PATCH] Prettier

---
 conf/modules.config      | 8 ++++++++
 workflows/taxprofiler.nf | 1 -
 2 files changed, 8 insertions(+), 1 deletion(-)

diff --git a/conf/modules.config b/conf/modules.config
index 531bd5a..2f5710e 100644
--- a/conf/modules.config
+++ b/conf/modules.config
@@ -208,4 +208,12 @@ process {
         ]
     }
 
+    withName: MULTIQC {
+        publishDir = [
+            path: { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" },
+            mode: params.publish_dir_mode,
+            saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
+        ]
+    }
+
 }
diff --git a/workflows/taxprofiler.nf b/workflows/taxprofiler.nf
index 38afdda..4afdd6c 100644
--- a/workflows/taxprofiler.nf
+++ b/workflows/taxprofiler.nf
@@ -165,7 +165,6 @@ workflow TAXPROFILER {
 
     ch_multiqc_files = ch_multiqc_files.mix( PROFILING.out.mqc )
 
-
     // TODO create multiQC module for metaphlan
     MULTIQC (
         ch_multiqc_files.collect()