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[skip ci] add comment about recommendation to split SR/LR

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James Fellows Yates 2023-01-24 11:39:37 +01:00
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docs/usage.md
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@ -64,6 +64,8 @@ ERR3201952,ERR3201952,OXFORD_NANOPORE,/<path>/<to>/fastq/ERR3201952.fastq.gz,,
> ⚠️ Input FASTQ and FASTA files _must_ be gzipped
> ⚠️ While one can include both short-read and long-read data in one run, we recommend that you split these across _two_ pipeline runs and database sheets (see below). This will allow classification optmisation for each data type, and make MultiQC run-reports more readable (due to run statististics having vary large number differences).
| Column | Description |
| --------------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| `sample` | Unique sample name [required]. |