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Apply suggestions from code review
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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@ -7,7 +7,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
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### `Added`
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- [#276](https://github.com/nf-core/taxprofiler/pull/276) Implemented batching in the KrakenUniq samples processing.
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- [#276](https://github.com/nf-core/taxprofiler/pull/276) Implemented batching in the KrakenUniq samples processing. (added by @Midnighter)
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- [#272](https://github.com/nf-core/taxprofiler/pull/272) - Add saving of final 'analysis-ready-reads' to dedicated directory. (❤️ to @alexhbnr for reporting, added by @jfy133)
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### `Fixed`
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@ -436,8 +436,8 @@
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"type": "integer",
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"default": 20,
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"fa_icon": "far fa-window-restore",
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"description": "Set the batch size for KrakenUniq",
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"help_text": "Specify the batch size for KrakenUniq. The reference database for KrakenUniq is loaded into memory once in a process and then used to classify many samples. This parameter determines for how many samples at a time."
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"description": "Specify the number samples for each KrakenUniq run",
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"help_text": "Specify the batch size for KrakenUniq. The reference database for KrakenUniq is loaded into memory once in a process and then used to classify many samples. When you have many samples, a single KrakenUniq run can be rather slow. Alternatively, we can split up KrakenUniq runs for a 'batch' of samples, allowing a balance between shared using a database for multiple samples, but also faster parallelised KrakenUniq runs. This parameter determines for how many samples at a time."
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},
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"run_bracken": {
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"type": "boolean",
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