mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-23 09:19:55 +00:00
Apply suggestions from code review
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
This commit is contained in:
parent
49086d9475
commit
08f06b9982
2 changed files with 3 additions and 3 deletions
|
@ -7,7 +7,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
|
|||
|
||||
### `Added`
|
||||
|
||||
- [#276](https://github.com/nf-core/taxprofiler/pull/276) Implemented batching in the KrakenUniq samples processing.
|
||||
- [#276](https://github.com/nf-core/taxprofiler/pull/276) Implemented batching in the KrakenUniq samples processing. (added by @Midnighter)
|
||||
- [#272](https://github.com/nf-core/taxprofiler/pull/272) - Add saving of final 'analysis-ready-reads' to dedicated directory. (❤️ to @alexhbnr for reporting, added by @jfy133)
|
||||
|
||||
### `Fixed`
|
||||
|
|
|
@ -436,8 +436,8 @@
|
|||
"type": "integer",
|
||||
"default": 20,
|
||||
"fa_icon": "far fa-window-restore",
|
||||
"description": "Set the batch size for KrakenUniq",
|
||||
"help_text": "Specify the batch size for KrakenUniq. The reference database for KrakenUniq is loaded into memory once in a process and then used to classify many samples. This parameter determines for how many samples at a time."
|
||||
"description": "Specify the number samples for each KrakenUniq run",
|
||||
"help_text": "Specify the batch size for KrakenUniq. The reference database for KrakenUniq is loaded into memory once in a process and then used to classify many samples. When you have many samples, a single KrakenUniq run can be rather slow. Alternatively, we can split up KrakenUniq runs for a 'batch' of samples, allowing a balance between shared using a database for multiple samples, but also faster parallelised KrakenUniq runs. This parameter determines for how many samples at a time."
|
||||
},
|
||||
"run_bracken": {
|
||||
"type": "boolean",
|
||||
|
|
Loading…
Reference in a new issue