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Fix mOTUs issues

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This commit is contained in:
James Fellows Yates 2023-01-16 15:09:30 +01:00
parent c8f6d713a3
commit 0947e9b8ca
1 changed files with 41 additions and 10 deletions
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51
assets/multiqc_config.yml
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@ -171,16 +171,37 @@ table_columns_placement:
non-primary_alignments: 1140 non-primary_alignments: 1140
reads_MQ0_percent: 1150 reads_MQ0_percent: 1150
error_rate: 1160 error_rate: 1160
MALT: Bracken:
"Num. of queries": 1200 "% Unclassified": 1200
Total reads: 1210 "% Top 5": 1210
Mappability: 1220 Centrifuge:
Assig. Taxonomy: 1230 "% Unclassified": 1300
Taxonomic assignment success: 1240 "% Top 5": 1310
diamond:
queries_aligned: 1400
Kaiju: Kaiju:
assigned: 1300 assigned: 1500
"% Assigned": 1310 "% Assigned": 1510
"% Unclassified": 1320 "% Unclassified": 1520
Kraken:
"% Unclassified": 1600
"% Top 5": 1610
MALT:
"Num. of queries": 1700
Total reads: 1710
Mappability: 1720
Assig. Taxonomy: 1730
Taxonomic assignment success: 1740
motus:
Total number of reads: 1800
Number of reads after filtering: 1810
Total number of inserts: 1820
Unique mappers: 1830
Multiple mappers: 1840
Ignored multiple mapper without unique hit: 1850
"Number of ref-mOTUs": 1860
"Number of meta-mOTUs": 1870
"Number of ext-mOTUs": 1880
table_columns_visible: table_columns_visible:
FastQC (pre-Trimming): FastQC (pre-Trimming):
@ -256,7 +277,7 @@ table_columns_visible:
Centrifuge: Centrifuge:
"% Unclassified": True "% Unclassified": True
"% Top 5": False "% Top 5": False
DIAMOND: diamond:
queries_aligned: True queries_aligned: True
Kaiju: Kaiju:
assigned: False assigned: False
@ -268,6 +289,16 @@ table_columns_visible:
Mappability: True Mappability: True
Assig. Taxonomy: False Assig. Taxonomy: False
Taxonomic assignment success: True Taxonomic assignment success: True
motus:
Total number of reads: False
Number of reads after filtering: True
Total number of inserts: False
Unique mappers: True
Multiple mappers: True
Ignored multiple mapper without unique hit: False
"Number of ref-mOTUs": False
"Number of meta-mOTUs": False
"Number of ext-mOTUs": False
table_columns_name: table_columns_name:
FastQC (pre-Trimming): FastQC (pre-Trimming):