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Fix mOTUs issues
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parent
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commit
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1 changed files with 41 additions and 10 deletions
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@ -171,16 +171,37 @@ table_columns_placement:
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non-primary_alignments: 1140
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non-primary_alignments: 1140
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reads_MQ0_percent: 1150
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reads_MQ0_percent: 1150
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error_rate: 1160
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error_rate: 1160
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MALT:
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Bracken:
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"Num. of queries": 1200
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"% Unclassified": 1200
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Total reads: 1210
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"% Top 5": 1210
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Mappability: 1220
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Centrifuge:
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Assig. Taxonomy: 1230
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"% Unclassified": 1300
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Taxonomic assignment success: 1240
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"% Top 5": 1310
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diamond:
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queries_aligned: 1400
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Kaiju:
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Kaiju:
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assigned: 1300
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assigned: 1500
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"% Assigned": 1310
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"% Assigned": 1510
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"% Unclassified": 1320
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"% Unclassified": 1520
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Kraken:
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"% Unclassified": 1600
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"% Top 5": 1610
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MALT:
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"Num. of queries": 1700
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Total reads: 1710
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Mappability: 1720
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Assig. Taxonomy: 1730
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Taxonomic assignment success: 1740
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motus:
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Total number of reads: 1800
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Number of reads after filtering: 1810
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Total number of inserts: 1820
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Unique mappers: 1830
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Multiple mappers: 1840
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Ignored multiple mapper without unique hit: 1850
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"Number of ref-mOTUs": 1860
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"Number of meta-mOTUs": 1870
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"Number of ext-mOTUs": 1880
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table_columns_visible:
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table_columns_visible:
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FastQC (pre-Trimming):
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FastQC (pre-Trimming):
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@ -256,7 +277,7 @@ table_columns_visible:
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Centrifuge:
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Centrifuge:
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"% Unclassified": True
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"% Unclassified": True
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"% Top 5": False
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"% Top 5": False
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DIAMOND:
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diamond:
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queries_aligned: True
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queries_aligned: True
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Kaiju:
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Kaiju:
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assigned: False
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assigned: False
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@ -268,6 +289,16 @@ table_columns_visible:
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Mappability: True
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Mappability: True
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Assig. Taxonomy: False
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Assig. Taxonomy: False
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Taxonomic assignment success: True
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Taxonomic assignment success: True
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motus:
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Total number of reads: False
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Number of reads after filtering: True
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Total number of inserts: False
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Unique mappers: True
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Multiple mappers: True
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Ignored multiple mapper without unique hit: False
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"Number of ref-mOTUs": False
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"Number of meta-mOTUs": False
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"Number of ext-mOTUs": False
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table_columns_name:
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table_columns_name:
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FastQC (pre-Trimming):
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FastQC (pre-Trimming):
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