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Merge pull request #217 from nf-core/combine-kreports-fix [skip ci]

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Dont fail on divide by 0 errors on centrifuge
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James A. Fellows Yates 2023-01-25 13:48:06 +01:00 committed by GitHub
commit 098ec087c9
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conf/modules.config
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@ -471,6 +471,7 @@ process {
} }
withName: KRAKENTOOLS_COMBINEKREPORTS_CENTRIFUGE { withName: KRAKENTOOLS_COMBINEKREPORTS_CENTRIFUGE {
errorStrategy = { task.exitStatus in [255,1] ? 'ignore' : 'retry' }
ext.prefix = { "centrifuge_${meta.id}_combined_reports" } ext.prefix = { "centrifuge_${meta.id}_combined_reports" }
publishDir = [ publishDir = [
path: { "${params.outdir}/centrifuge/" }, path: { "${params.outdir}/centrifuge/" },