From 0cbd0a80137389228d2c9ed6e96c82e7f7aa60c9 Mon Sep 17 00:00:00 2001 From: Sofia Stamouli <91951607+sofstam@users.noreply.github.com> Date: Tue, 20 Dec 2022 17:33:35 +0100 Subject: [PATCH] Apply review suggestion Co-authored-by: James A. Fellows Yates --- docs/output.md | 1 + 1 file changed, 1 insertion(+) diff --git a/docs/output.md b/docs/output.md index 790c0e6..7249c62 100644 --- a/docs/output.md +++ b/docs/output.md @@ -23,6 +23,7 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and processes d - [Bowtie2](#bowtie2) - Host removal for Illumina reads - [minimap2](#minimap2) - Host removal for Nanopore reads - [samtoolsstats](#samtoolsstats) - Statistics from host removal +- [Bracken](#bracken) - Taxonomic classifier using k-mers and abundance estimations - [Kraken2](#kraken2) - Taxonomic classifier using exact k-mer matches - [KrakenUniq](#krakenuniq) - Taxonomic classifier that combines the k-mer-based classification and the number of unique k-mers found in each species - [Bracken](#bracken) -