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@ -147,14 +147,10 @@ workflow PROFILING {
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def ch_kraken2_output = KRAKEN2_KRAKEN2.out.report
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.filter {
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meta, report ->
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meta['tool'] == 'bracken' && meta['instrument_platform'] != 'OXFORD_NANOPORE'
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if ( meta['instrument_platform'] == 'OXFORD_NANOPORE' ) log.warn "[nf-core/taxprofiler] Bracken has not been evaluated for Nanopore data. Skipping Bracken for sample ${meta.id}."
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meta['tool'] == 'bracken' && meta['instrument_platform'] != 'OXFORD_NANOPORE'
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}
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// If necessary, convert the eight column output to six column output.
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if (params.kraken2_save_minimizers) {
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ch_kraken2_output = KRAKEN2_STANDARD_REPORT(ch_kraken2_output).report
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